Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq36 179 3e-40 >seq36 Length=2530450 Score = 179 bits (198), Expect = 3e-40 Identities = 212/285 (74%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || ||||||| ||| | ||||| |||||||| ||||| || || || || || Sbjct 2102317 GGGGGATTTTTCAAAATGTAAGTGTTTAGCTTATGATTGAAGTCAAGAGTTCCATGGTAG 2102376 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGC--GGACACGATGAGCTCAG 34321 || || |||||||||||||| | ||||||| ||| || || | |||| | | | | Sbjct 2102377 CCACAAGCTTTGCAGCCCTGGCTGATAATGCCCTTCTTTGCTTGAACAC--TCAAAACGG 2102434 Query 34322 TCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGT 34381 |||| || |||||||||| || ||||||||||| || || || ||||||||||| || | Sbjct 2102435 TCTCAGGATTGTCACATTGTGGGCACAACACAAATTTCCGAATAAAACCATCAAGGAGAT 2102494 Query 34382 CCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGA 34441 | || |||||||| | || ||||| || ||||| ||| | || || |||||| |||| | Sbjct 2102495 CTTGCAACTTAACAGCATCATGGGACCCATTGACAATGTAACGATCATTTTTGAAATCAA 2102554 Query 34442 CCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 | |||||||| |||| ||| || || || || ||||| |||| Sbjct 2102555 AGTTGGTTTGCGCACCCAACTCACAGCCAAAATATTTTGTGGGGT 2102599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412810087671659