Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022052.1 Length=76050 Score E Sequences producing significant alignments: (Bits) Value seq122 87.8 9e-13 >seq122 Length=4874392 Score = 87.8 bits (96), Expect = 9e-13 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 51860 CTTCGGCGGTAAGCAGAACGCGGCGGGCTTCATTGAGATTGATTCGCACGTAGGCGTCAT 51919 ||||||||| | | || || ||||| || | | | || ||||||| || | || Sbjct 3983532 CTTCGGCGGCACGGTCAATGCCAGGGGCTACAAGGTGCTGGACCCGCACGTGGGTCTGAT 3983473 Query 51920 TTACGGCGACTCCATCACGCTTGAGCGCGCTAA---GAGCATCACT-GACCGGATGGCGA 51975 ||||||||||| || || || ||||| || || || | | | | | | ||| | | | Sbjct 3983472 CTACGGCGACTCGATTACCCTCGAGCGTGCCAATCAGATCCTGAGTCGTCTGGAGGCCAA 3983413 Query 51976 AGCTCGGCTATGCCTCTTCCAATGTGGTGTTCGGCGTGGGCAGCTTCACCTATCAGCACA 52035 || ||| |||| |||||||||||||||||| || | || || ||| ||| Sbjct 3983412 AG----GCTTTGCCAGCAGCAATGTGGTGTTCGGCGTCGGGTCTTATACGTACCAGTACA 3983357 Query 52036 ACACGCGCGACACGTTCGGGTCCGCGATGAAAGCGACGT 52074 ||||||| ||||| || || | ||| ||||||||||||| Sbjct 3983356 ACACGCGTGACACCTTTGGTTTCGCCATGAAAGCGACGT 3983318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243216633781173