Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq122 113 2e-20 >seq122 Length=4874392 Score = 113 bits (124), Expect = 2e-20 Identities = 348/533 (65%), Gaps = 9/533 (2%) Strand=Plus/Minus Query 67727 ATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGAC 67786 ||||| ||||| || | || ||||| | || ||| | ||| || || || |||| Sbjct 3357440 ATCGATGCCGAGCACGCCCTTGACCCGGTCTATGCCAAGAAGCTGGGCGTAGACATCGAT 3357381 Query 67787 AATCTCGTG-GTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCT 67845 || || | ||| | ||||| || || || |||||||| ||||| ||| ||| || Sbjct 3357380 AACCTGCTCTGTTCT-CAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGCT 3357322 Query 67846 CGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCG 67905 | || || | |||| | | ||| | || ||||| || ||||| ||| ||| Sbjct 3357321 GGCGCGTTCCGGTGCGGTTGACGTGATCATCGTTGACTCCGTTGCGGCGCTGACGCCAAA 3357262 Query 67906 GGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTC 67965 ||||| | ||||| || ||||| ||||| ||| | ||||| || || ||||| Sbjct 3357261 AGCGGAAATTGAAGGTGAAATCGGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAG 3357202 Query 67966 TCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGT 68025 ||||| ||||| |||||| |||| | | | | ||| ||| || | | | Sbjct 3357201 CCAGGCGATGCGTAAGCTGGCCGGTAATCTGAAAAACTCCAGCACCCTGCTGATCTTCAT 3357142 Query 68026 GAATCAGCTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAATGAGACCACCACC 68083 || ||| | || ||| || || | || | || |||| || ||||| ||| Sbjct 3357141 CAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAA--CCCG---GAAACCACGACC 3357087 Query 68084 GGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACC 68143 |||||||| || ||| ||||||||||| || ||| ||||| ||||| | |||| | Sbjct 3357086 GGTGGTAACGCACTGAAGTTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGTGCG 3357027 Query 68144 GAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAG 68203 || ||||| || || | ||||| | | || |||||||| || || || ||||| Sbjct 3357026 ATTAAAGAAGGTGACGAAGTGGTCGGTAGCGAAACCCGCGTGAAAGTGGTGAAAAACAAA 3356967 Query 68204 CTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 68256 | || | ||| | ||||||||||| ||| | |||||||| || || Sbjct 3356966 ATCGCTGCCCCGTTCAAGCAGGCTGAGTTCCAGATCATGTACGGCGAAGGTAT 3356914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247430712094704