Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq122 96.9 6e-15 >seq122 Length=4874392 Score = 96.9 bits (106), Expect = 6e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGAT 120286 |||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 4689758 TGCCGGCTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGAT 4689817 Query 120287 CCCTGATGCCGGCACCAT 120304 || | ||||||||||| Sbjct 4689818 TCCGGTAGCCGGCACCAT 4689835 Score = 96.9 bits (106), Expect = 6e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGAT 120286 |||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 4696909 TGCCGGCTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGAT 4696968 Query 120287 CCCTGATGCCGGCACCAT 120304 || | ||||||||||| Sbjct 4696969 TCCGGTAGCCGGCACCAT 4696986 Score = 84.2 bits (92), Expect = 4e-11 Identities = 143/203 (70%), Gaps = 17/203 (8%) Strand=Plus/Plus Query 105101 ACTTCGACATCCGCGCTTCGGTGTAACGCTGTGCGGCTGCCGGGTT---GATCG----GA 105153 ||||||||| |||| ||||||||||||| ||||| | || || ||||| | Sbjct 3673694 ACTTCGACAGGCGCGATTCGGTGTAACGCATCGCGGC-GAAGGATTTTGGATCGTCCGGT 3673752 Query 105154 GTACCCCAGTTACCCTGACCATCGAC-AGCAGG---CGGCATG-----GTGTTCGCAATC 105204 | |||||||| ||||| |||||||| ||| | ||| | | | | ||| ||| Sbjct 3673753 GCCCCCCAGTTGCCCTGGCCATCGACCAGCGGATAACGGTAGGAGAACGGCTGCGCCATC 3673812 Query 105205 GTCACCATCGCACCGTATGCTGCGGCGTCGCCGTGCGGGTGGTACTTACCGATGGTGTCA 105264 ||||||||| | || ||| |||||||||||| ||||| ||||| | |||| Sbjct 3673813 AGCACCATCGCTTCATAGCAGGCGCTGTCGCCGTGCGGATGGTATTTACCCAGCACGTCA 3673872 Query 105265 CCGACAGTACGTGCCGACTTCTT 105287 ||||| ||||||||||| || || Sbjct 3673873 CCGACGGTACGTGCCGATTTTTT 3673895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825852141038520