Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq508 107 3e-17 seq122 104 4e-16 seq138 98.7 2e-14 seq93 98.7 2e-14 seq38 98.7 2e-14 seq634 95.1 2e-13 seq1 87.8 3e-11 >seq508 Length=70226 Score = 107 bits (118), Expect = 3e-17 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1485514 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 |||| || ||| ||| | || || || ||||| |||||||| | | | ||| ||| Sbjct 50400 GCCAAATCACCGGGCAGAAGGAGACGGACAGCGGTTTGGATCTCCGGAGAGGTGATGGTG 50459 Query 1485574 TTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1485633 | |||||| | | || || |||| |||||||| | |||| | | | ||||||| Sbjct 50460 ACCCTCTTGTTGGAATGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTTCAACATGTCG 50519 Query 1485634 TTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACC 1485693 || || || |||||| |||| ||||| | |||| ||||||| || |||||||||||| Sbjct 50520 TTCACGAATGAGTTCGTGATGGACATGGCTTTGCTGGAGATACCACTTTCGGGGTGCACC 50579 Query 1485694 TGCTTGAGCACCTTGTA 1485710 ||||| || ||| |||| Sbjct 50580 TGCTTCAGGACCGTGTA 50596 >seq122 Length=4874392 Score = 104 bits (114), Expect = 4e-16 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 |||||||||||||||| || || || ||||| | | |||||||| ||||||||||||| Sbjct 2176511 TGCCGTCGGTGCCGTTCTTGAAGCCAACCGGGCAGGAGAGCGCCGAGGCCATTTCGCGGT 2176452 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCA 2175175 | | |||||| ||||||||||||||||| | || ||||| Sbjct 2176451 GGATCTGGCTTTCGGTGGTGCGCGCGCCGATAGCCCCCCA 2176412 Score = 100 bits (110), Expect = 5e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2175014 GATCCAGAGAAAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCAC 2175073 ||| | || |||| ||||||| || || | ||||| ||| | | ||| || ||| Sbjct 3337993 GATACCGACAAAGCGGTGTGGCATGGCCGCAGCGCGCATGGCGTTAATCGCGGTACCCAG 3338052 Query 2175074 GCTGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCG 2175133 ||||||||||||||||||||| || || ||||||| | ||| | || ||||||||||| Sbjct 3338053 GCTGCCGTCGGTGCCGTTTTTGAAGCCAACCGGCATTGACAGGCCAGAAGCCATTTCGCG 3338112 Query 2175134 GTGCACCTGGCTCTCGGTGGTGCGCGCGCC 2175163 |||| |||| || ||||| || ||||| Sbjct 3338113 GTGCGTCTGGGATTCAGTGGTACGGGCGCC 3338142 >seq138 Length=785392 Score = 98.7 bits (108), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || || ||||| | |||||| | ||| | |||| ||||| | Sbjct 564155 GAAAAGCGCACGGATGATATTTCAACTTGGGACGCCGACTTCTTGAAGGTAGACCAGGGC 564214 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||| | || || | || | || ||||||||||| ||||||||| | || || || Sbjct 564215 ACCTTGTTCGAACTTATTTTGGCTGCCAACTACCTGGACATCAAGGGTTTGCTGGACGTG 564274 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| || |||||| | || || ||||| | || || || ||||| |||||| Sbjct 564275 ACCTGCAAGACTGTCGCCAACATGATTAAAGGCAAAACCCCTGAAGAAATCCGGAAGACC 564334 Query 2035746 TTTAACATCAAG 2035757 || ||||||||| Sbjct 564335 TTCAACATCAAG 564346 >seq93 Length=974399 Score = 98.7 bits (108), Expect = 2e-14 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 ||||| || ||||| ||| || || ||||| || || | |||||| ||||| || ||| Sbjct 914641 ATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAAATG 914700 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 ||| || || || ||||| ||||| ||||| || || |||||| | | | ||||| Sbjct 914701 GCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTACTCGCTCA 914760 Query 794476 GCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTC 794535 ||||| ||| | || | || | ||||||||||| ||||| || ||||| ||| || Sbjct 914761 GCAAACGTGGC-AGAC--TCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCTTC 914817 Query 794536 ACCGAGGGCACCGTGTCGATGGC 794558 || | || | || || ||||| Sbjct 914818 ACACATGGGAGTGTTTCAATGGC 914840 >seq38 Length=2191528 Score = 98.7 bits (108), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || || ||||| |||||| || ||||| |||| ||||| Sbjct 840171 GAGAAGCGCACTGATGATATTTCAAGTTGGGACGCGGACTTTTTGAAGGTAGACCAGGGT 840112 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| ||||| | || | || ||||||||||| ||||||||| | | ||| || Sbjct 840111 ACCCTATTTGAACTTATTTTGGCTGCCAACTACCTGGACATCAAGGGTTTGTTGGATGTG 840052 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || || |||||| | ||||| || || | || || || ||||| |||||| Sbjct 840051 ACCTGCAAAACTGTCGCCAACATGATCAAAGGTAAAACCCCTGAAGAGATCCGGAAGACC 839992 Query 2035746 TTTAACATCAAG 2035757 || || |||||| Sbjct 839991 TTCAATATCAAG 839980 >seq634 Length=45141 Score = 95.1 bits (104), Expect = 2e-13 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118709 GGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGG-TCCGAGAGCATGTCGACGA 118767 ||||||||| ||||| |||||||||||||| || | | || || || |||| Sbjct 31573 GGCGATCTGCTTGGTGAGACGCTCCTGCACCTGGAGTCGCCTGCTGTAG-ATCTCCACGA 31515 Query 118768 TGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCT 118827 | | | | |||||| || || | |||| | | |||||||||||| | | | ||| Sbjct 31514 TCCTGGCCAGCTTGCTGAGACCCAGGATCTTCTTCTGGGGCAGGTAGCCGATGGACACCT 31455 Query 118828 TGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGG 118887 ||||| ||||||| ||| || ||||||||||||||||| | |||||||| ||| Sbjct 31454 TGCCGTAGAAGGGCACCAGGTGATGCTCGCACATGGAGAACATCTCAATGTCCTTGACGA 31395 Query 118888 TCACCATCTCG 118898 |||||||||| Sbjct 31394 CCACCATCTCG 31384 >seq1 Length=5261296 Score = 87.8 bits (96), Expect = 3e-11 Identities = 141/202 (70%), Gaps = 13/202 (6%) Strand=Plus/Plus Query 1485514 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---GGTGCCGATC 1485570 |||| ||| ||| ||| | || || || |||||||||||||| || |||| ||| Sbjct 2764803 GCCAATTCACCGGGCAGAAGGAGACGGACAGCGGTCTGGATCTCCCGACAGGTGGTGATG 2764862 Query 1485571 GTGTTGCGCTTGTT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1485628 || | |||||| |||| || |||||| || | ||| | ||| Sbjct 2764863 GTCGCCCTCTTGTTGTAGTGTCGGCTTGGCGGCGGGGC--------GATCCTCTCGCAGG 2764914 Query 1485629 TGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGT 1485688 ||||||| || || ||||||||||| | ||| | |||| ||||| | || |||||||| Sbjct 2764915 TGTCGTTCACGAATGAGTTCATGATGGGCATGGCTTTGCTGGAGGTACCAGTGTCGGGGT 2764974 Query 1485689 GCACCTGCTTGAGCACCTTGTA 1485710 | ||||||||||| |||||||| Sbjct 2764975 GGACCTGCTTGAGGACCTTGTA 2764996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915580176124457