Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022343.1 Length=159991 Score E Sequences producing significant alignments: (Bits) Value seq122 122 9e-23 >seq122 Length=4874392 Score = 122 bits (134), Expect = 9e-23 Identities = 276/407 (68%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 15050 CTTCCGACCCCCATCATGGCAGGCGTTCGTACTCCTACCCGTCAGTTCAGTTCATGCGTT 15109 || ||||| || || ||| | ||||| || || || || || |||||||| || ||||| Sbjct 2805877 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 2805936 Query 15110 CTGATCAAAACTGGCGACACGCTGGATTCCATCAACGCAACCGCCAAATCTATCGTAGAC 15169 ||||| | ||||||| || |||||||| ||||| ||| ||| | || || | Sbjct 2805937 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 2805996 Query 15170 TATGTGAGCAAGCGTGCTGGCATCGGATTTGACGTTGGTGCAATTCGCGGTATCGGCAGT 15229 || || ||||||| || ||||| || ||| ||| || || | | ||||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 15230 CCTATCCGGGGCGGAGAGATGGTCCACACTGGTCTGG-TTCCATTC-ATCA--AATATCT 15285 || ||||| ||||| || ||||||| || ||| |||| ||| || | | | | Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGG-CTGCATTCCGTTCTATAAGCACTTCCA 2806115 Query 15286 GACCGGGGCACTGAAGTCGTGCTCTCAGGGCGGTATTCGCGGTGGTGCTGCTA-CAGCTT 15344 ||||| || ||||||| |||||||||||||| | ||||| ||||| || | | || Sbjct 2806116 GACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTT 2806172 Query 15345 ATATCCCGCTGTGGCATTACCAGTTCGACGATGTCGTTGTGTTGAAGAACAACCGTGGTA 15404 || ||| |||||||| | | || | | ||| ||||||||||||| || Sbjct 2806173 CTA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCG 2806231 Query 15405 CGGAAGAAAACCGCGAGCGCCGTATCGACTATGGTATTCAGATCAAC 15451 |||| ||||||| ||| | ||| ||||| || | ||| | ||| Sbjct 2806232 TTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 2806278 Score = 102 bits (112), Expect = 8e-17 Identities = 213/312 (68%), Gaps = 9/312 (3%) Strand=Plus/Minus Query 144416 CTATGGGAGATCTTTGGCGGAACCCAGACCGAAACGGGCCACTTCCTGTTGGATGAGCAC 144475 || ||||||||||| ||||| || | | | |||| || || |||| |||| Sbjct 3983543 CTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGGGCTACAAGGTGCTGGACCCGCAC 3983484 Query 144476 ATCGGCCTGATCTACGGTGACTCCATTACCCT-GAGCCGTGAAGATCAGATCTTTGCTCG 144534 | || ||||||||||| ||||| |||||||| ||| |||| |||||||| | ||| Sbjct 3983483 GTGGGTCTGATCTACGGCGACTCGATTACCCTCGAG-CGTGCCAATCAGATCCTGAGTCG 3983425 Query 144535 TCTGGCTG--AACGGAATTTCGCTTCCATCAACGTAGTGTTCGGTATCGGTTCCTATACT 144592 ||||| | || || || || || ||| || |||||||| |||| || ||||| Sbjct 3983424 TCTGGAGGCCAAAGG--CTTTGCCAGCAGCAATGTGGTGTTCGGCGTCGGGTCTTATACG 3983367 Query 144593 TACCAGATGAACACCCGTGATAGTACCGGGACGGCGGTGAAAGCCACAGCTGGGAAGGTC 144652 |||||| ||||| ||||| | || || ||||||| || ||| | || Sbjct 3983366 TACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCGACGTATGGCGAAGTG 3983307 Query 144653 AACGGTGAATTCCGTGAGATTTTCAAAGAACCGAAGACTGACAAAGGTGGTACGAAGAAA 144712 |||| || |||||||| |||||| | ||||| || ||||| || | ||| || Sbjct 3983306 CACGGAGAGGGGCGTGAGATCTTCAAACAGCCGAAAACCGACAA---CGGCATGAAAAAC 3983250 Query 144713 TCTGCGCGTGGT 144724 |||||||| ||| Sbjct 3983249 TCTGCGCGCGGT 3983238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511803129075480