Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3962 116 2e-21 seq275 109 4e-19 seq43 104 2e-17 seq19 100 2e-16 >seq3962 Length=6517 Score = 116 bits (128), Expect = 2e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||||||||| || ||| | || |||| || || ||||| || || |||||| Sbjct 6286 TTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 6227 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||||||| | || | ||||||||||| | ||||| || || || || Sbjct 6226 AGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCAC--ATTCT 6169 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || || ||| || ||| || || | || |||||||| || || || ||||| |||| Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 34968 AGATCTGCAT 34977 | |||||||| Sbjct 6108 AAATCTGCAT 6099 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| || ||||| ||||| ||||| || | | |||| | || Sbjct 398 AGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCC 339 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||||||||||||||| ||||| ||| | || | ||||| ||||| Sbjct 338 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 279 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || || || || ||| || || | || |||||| Sbjct 278 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 219 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || || |||||||| Sbjct 218 TTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || | | |||| |||| || |||||||| ||||||||| Sbjct 149 TCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAG 90 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||| ||||| ||| | || | ||||||||||| Sbjct 89 ATCAGTCTCTGCTGATCTGGGGGGATGCCCTCCTTGTC 52 >seq275 Length=398669 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || |||||||| ||||| || || ||||| |||| || || |||||||| || || || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||||||| | || | || |||||||| | ||||| ||||||| | Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCA 170604 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || || || || || || || | ||| || || || || |||||||| || |||||| Sbjct 170603 ATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAAG 170544 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 170543 ATCTGCAT 170536 >seq43 Length=2082672 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | |||| ||||||||||| || ||||| || | | || |||| Sbjct 901057 AGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCT 900998 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||||| || ||||||||| | || | ||||| || || Sbjct 900997 TCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCC 900938 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || || || || ||| || || | || |||||| Sbjct 900937 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 900878 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 900877 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || ||| || || | ||| ||||||||| || || ||||| || Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| || || ||||| || || ||||||| || ||||| ||| | || Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | ||||| || ||| | || || ||| || || || Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACT 901121 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || ||||| ||||| |||||||||||||| Sbjct 901120 TCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 >seq19 Length=2947477 Score = 100 bits (110), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 |||||||| || ||||| || | | | |||| || || ||||| || |||||||| Sbjct 340561 TTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGATG 340620 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||||||| | || | || |||||||| | || || || || || || Sbjct 340621 AGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCAC--ATTCT 340678 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || || || || |||||| |||| || |||||||| ||||| |||||||| || | Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 340739 AGATCTGCATG 340749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325667939766797