Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq505 892 0.0 seq411 82.4 2e-11 seq3091 80.6 7e-11 >seq505 Length=203535 Score = 892 bits (988), Expect = 0.0 Identities = 850/1082 (79%), Gaps = 34/1082 (3%) Strand=Plus/Plus Query 18729 CGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTG 18788 |||||||| |||||||| | |||| ||||||| | ||||||||||||||| || || | Sbjct 27179 CGTAGATCCTTTTCTTT-TGCGTTAGCGTTTCAACAACTGGAAAAAACTTTCAGCTACCG 27237 Query 18789 CGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGA 18848 | || | ||||| || || |||||| |||| |||||||||| |||| ||||||||||| Sbjct 27238 CTTTAACGTGACAATTTCC-CGACGGTTCATGCTGCCCTCCAAGCCGTATGATTTCAGGA 27296 Query 18849 ACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACC-TGC 18907 |||||||||||||| |||||| ||||||| | | || | |||||||||||| || | Sbjct 27297 -CGACTGCCACTCATGGCTTGTATACTGACAGTCCAGACCCGAATGAACCAGCGCCCTTT 27355 Query 18908 TTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTC 18967 |||| |||||||| ||||| || | |||||| || | ||||||||||| ||||||||| Sbjct 27356 TTTTTGGGATTACGCCGCCATACAGTCATCAGCAGGGTGTTCAGGACAATGTCCTTTGTC 27415 Query 18968 ATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCC 19027 ||||||| ||| | |||||||| || | |||||| |||||||| | ||||||||| || Sbjct 27416 ATCCGGGATTGCGTGGACCAGCCGATCATTTTGCGTGAGAACAGATTAACAACCACGGCA 27475 Query 19028 AGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCC 19087 || ||||||||||||||||| | || || ||||| ||| |||||| ||||| ||||| Sbjct 27476 AGTTACAGCCAGCCTTCGTGGGCCCTCATATAGGTTATGCCCGTTATCCAACCCTCATG- 27534 Query 19088 GGTGCTTCCGAGTTGAACTGCCGCTGGAGCCTGTTGGGCGTCACGATGCTGGTTTCACCC 19147 || |||||||| | ||| ||||| ||| ||| |||||| || | ||| | Sbjct 27535 ---------GA-TTGAACTGTCACTGTAGCCTATTGAGCGACACGATACTTGCCTCATC- 27583 Query 19148 TTACGTGCCCGTGGGCTACGGTACCCGACCTGAGCCCTTATCCCGG--------CACGCT 19199 | | | |||| ||||| || | |||||||||||| |||| ||| |||| | Sbjct 27584 TGATATACCCGCGGGCTCCGCAATCCGACCTGAGCCTTTATACCGATATACCGACACGTT 27643 Query 19200 TCATCAGTCGCCAGACACGGTTAACTCCGCACTGTTGTCCGGTATCCCGCAGGTCGAGGT 19259 |||||| | ||||||| | | |||||||||||||| || |||||| || || || | Sbjct 27644 TCATCAATAGCCAGACTATGCTGACTCCGCACTGTTGAACGCTATCCCCTAGATCCAGAT 27703 Query 19260 GGATCTTGCGATAACCATAAACGCAACCCGACTCCAGCCAGAACTGCTTTATCAGCCCCG 19319 ||||||||||||||||||| ||||| ||||| ||| | ||| ||| || | | | | | Sbjct 27704 GGATCTTGCGATAACCATAGACGCATCCCGATTCCGGGTAGAGCTGTTTAACCTGTCTTG 27763 Query 19320 TCAGCCTCAGGTCAGCATGATGCCGCCGTGAATCCGGCTGCTGAAGCCAGGCGTAAAAAC 19379 | || |||| ||| | ||||| || |||| ||||||||||| ||||| | |||| | Sbjct 27764 TTAGTCTCAAGTCTGACTGATGGCGTTAGGAATGCGGCTGCTGAAACCAGGTGAAAAAGC 27823 Query 19380 CACTCGGATGCACATCCAGCACCCGACAAAGCAGTCGGACAGGCCAGCAATGGGTGTTGT 19439 |||| || | ||||||||| || | | ||| | || |||||||||||| ||| ||||| Sbjct 27824 CACTGGGCTCAACATCCAGCGTCCTATAGAGCCGGCGAACAGGCCAGCAACGGGCGTTGT 27883 Query 19440 CACGGATAAAGGCGTACCTCAGTCGGACAGCTTTGCGAAGTACGCCGCTG-TAGATTCAA 19498 |||| || |||||||| || ||| |||||||||||||||||||| | | || |||| Sbjct 27884 CACGAATGAAGGCGTAACTATGTCCTACAGCTTTGCGAAGTACGCCACGGATATTTTCAG 27943 Query 19499 TATGTCCCGTTCGTCGGTAACCCGCTTCAGCTCTTTCTGGAGGCGTCGGATCTCAGCCTG 19558 ||||||||||||| ||||||| || | |||||||||||||||||| | || ||| ||||| Sbjct 27944 TATGTCCCGTTCGACGGTAACACGTTCCAGCTCTTTCTGGAGGCGGCAGAGCTCGGCCTG 28003 Query 19559 AGCGTCTGACTGGACTTTATTGGTTGAGGAATCCGGGCCATATGCCTTTATCCAGGCATA 19618 ||| |||||||| |||||| || ||||||||||| || || ||||||||| || || Sbjct 28004 AGCATCTGACTGTTCTTTATGAGTGGAGGAATCCGGACCGTACTTCTTTATCCAAGCGTA 28063 Query 19619 AAGACTGTGGGTGGTGATACCGAGACGTGTTGCCACGCTGGAAACAGAATGGCCGCGATC 19678 ||||||||||||||||||| ||||||||||||| ||||| |||||||||| || |||| Sbjct 28064 AAGACTGTGGGTGGTGATATCGAGACGTGTTGCAACGCTTGAAACAGAATAACCATGATC 28123 Query 19679 AACAACCTGTTTTACCGCTTCAATTTTAAACTCTTCGGGATAACGCTTACCGCTCATGGG 19738 |||||||||||| || |||| ||||||| |||||||||||||||| ||||||||||| || Sbjct 28124 AACAACCTGTTTGACTGCTTAAATTTTATACTCTTCGGGATAACGTTTACCGCTCATTGG 28183 Query 19739 CACCTCTCTTTAAGTCATCTTAAATGACTCTGAGGTGTCTGTTAAACCTGTGGCGATTCA 19798 |||||||||||||| | |||||||||||||||| |||||| ||||||||||| Sbjct 28184 CACCTCTCTTTAAGCC---------GACTCTGAGGTGTCTGATAAACCCGTGGCGATTCA 28234 Query 19799 TT 19800 || Sbjct 28235 TT 28236 Score = 104 bits (114), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18871 GTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACAC 18930 |||||||| || | |||| ||||| | || | | || | ||||| ||||||| Sbjct 15224 GTACTGACCACCACGGTCAGTGTGAACAATGACATTTTCCGGACGTTTACGCCGCCACAG 15283 Query 18931 GGCCATCAGAAGTGCATT-CAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGC 18989 ||||| | ||||| | |||| ||| | | ||||||||| || ||||||||||| Sbjct 15284 TGCCATTTGCAGTGCGTCGCAGG-CAAGCTGCGCTGTCATCCGTGGTGACATTGACCAGC 15342 Query 18990 CAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAG 19049 |||||||| ||||| ||||||||| ||||| || || || ||||||||||||| | Sbjct 15343 CAATAACTGCACGCGACCACAGGTCAATCACCACTGCAAGGTAGAGCCAGCCTTCGTCCG 15402 Query 19050 TCCGGATGTAGGTGATGTC 19068 | || | || |||||||| Sbjct 15403 TGCGAAGATACGTGATGTC 15421 >seq411 Length=157309 Score = 82.4 bits (90), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 30816 GCAAAAAAGCGGGTTTTCACCCGTCAGAATCTGGCGGGGATCCGTCAGTAAAATCAAAAC 30875 |||||| || ||||||||| ||||||||||| |||||||||||||||| |||| || Sbjct 157066 GCAAAACAGGCTATTTTCACCCCCCAGAATCTGGCAGGGATCCGTCAGTAAATTCAACAC 157125 Query 30876 ATGATCCGTCAGATaa---aaaaaCTTCTCGTCCGGACGCTTCGCAACCGGACACGCAG 30931 | ||||| ||| || |||| | || ||| || ||| |||||| ||| ||||| Sbjct 157126 AAGATCCATCATTAAAATCAAAACCCACTTGTCAGGTTGCTGAGCAACCCGACCCGCAG 157184 >seq3091 Length=6183 Score = 80.6 bits (88), Expect = 7e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 30443 ATGAGCACTAAATTAACCGGCTATGTATGGGATGGTTGCGCAGCGTCAGGCATGAAATTA 30502 |||||| ||| ||| ||| ||| || |||||||| |||||| ||| |||||||| | Sbjct 312 ATGAGCGTTAAGTTATCCGCCTACGTCTGGGATGGCTGCGCACTGTCCGGCATGAAGCTG 371 Query 30503 TCCAGCGTGGCAATTATGGCCCGCCTGGCTGATTTCAGTAATGACGAAGGTGTGTGCTGG 30562 || || | || ||||||||||||||||| | | | ||| || || ||||||||| Sbjct 372 TCGGAAGTAGTCATCATGGCCCGCCTGGCTGACTGGTGCAGTGATGATGGGGTGTGCTGG 431 Query 30563 CC 30564 || Sbjct 432 CC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127094546878320