Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022768.1 Length=154701 Score E Sequences producing significant alignments: (Bits) Value seq122 91.5 1e-13 >seq122 Length=4874392 Score = 91.5 bits (100), Expect = 1e-13 Identities = 267/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 103240 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 103299 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 2805877 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 2805936 Query 103300 CTTATCAAAACCGGTGACACTTTGGACTCGATCAATGCTACAGCCAAAAGTATTGTTGAT 103359 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 2805937 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 2805996 Query 103360 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 103419 || || || | || || || ||||| || | | ||| || |||| | || ||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 103420 CCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAA--AATATCTG 103476 || ||||| |||||| | ||||| ||| |||| ||| |||| | | | | Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAG 2806116 Query 103477 ACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCTA 103535 || | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 2806117 ACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTC 2806173 Query 103536 TATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCT 103595 || ||| || |||||| || | || | |||| |||||||||||||| || | Sbjct 2806174 TA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGT 2806232 Query 103596 TGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 103641 ||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 2806233 TGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 2806278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494876454326280