Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022772.1 Length=156338 Score E Sequences producing significant alignments: (Bits) Value seq122 89.7 5e-13 >seq122 Length=4874392 Score = 89.7 bits (98), Expect = 5e-13 Identities = 269/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 104945 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 105004 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 2805877 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 2805936 Query 105005 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 105064 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 2805937 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 2805996 Query 105065 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 105124 || || || | || || || ||||| || | | ||| || |||| | || ||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 105125 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTG-GTTCCTTTC-ATAA--AATATCT 105180 || ||||| |||||| | ||||| || ||| |||| ||| |||| | | | Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGG-CTGCATTCCGTTCTATAAGCACTTCCA 2806115 Query 105181 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCT 105239 ||| | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 2806116 GACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTT 2806172 Query 105240 ATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTC 105299 || ||| || |||||| || | || | |||| |||||||||||||| || Sbjct 2806173 CTA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCG 2806231 Query 105300 TTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 105346 |||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 2806232 TTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 2806278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500114444225040