Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_022986.1 Length=93147 Score E Sequences producing significant alignments: (Bits) Value seq122 118 6e-22 >seq122 Length=4874392 Score = 118 bits (130), Expect = 6e-22 Identities = 213/308 (69%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 75492 GCCGACTTCTTCTTGC---TGTCAGTTTTCGGGTCTTTGAAGATTGCAATGCCTTCCCCG 75548 || || || ||| ||| |||| |||||||| | ||||||||| || || || ||| Sbjct 3983245 GCAGAGTTTTTCATGCCGTTGTCGGTTTTCGGCTGTTTGAAGATCTCACGCCCCTCTCCG 3983304 Query 75549 TTCACTTCCGTGTAGGTTGCTTTCACTGCAAATCCGAAAGTGTCTCGGGTGTTGCACTGG 75608 | |||||| || || ||||||| || || || || ||||| || |||||| ||||| Sbjct 3983305 TGCACTTCGCCATACGTCGCTTTCATGGCGAAACCAAAGGTGTCACGCGTGTTGTACTGG 3983364 Query 75609 TAGGTGTAACTGCCAACTCCAAACACTACGTTCAGGGAAGCGAAACCTTTCTCCTTCAAG 75668 || || ||| || || || ||||| || || | || || ||||| ||| || Sbjct 3983365 TACGTATAAGACCCGACGCCGAACACCACATTGCTGCTGGCAAAGCCTTTGGCCTCCAGA 3983424 Query 75669 CGCTCCAAGATTTTAGCTGCACGG-CGAGTTGTAATGGAATCTCCATAGATCAGACCGAT 75727 || || ||| | | ||||| |||| ||||| || || || ||||||||||| | Sbjct 3983425 CGACTCAGGATCTGATTGGCACGCTCGAGG-GTAATCGAGTCGCCGTAGATCAGACCCAC 3983483 Query 75728 ATGAGAATCGAGCATCTTATAACCTGCTTCGTTCACAGTGCCGCCGAAGGTTTCCCACAG 75787 || | || |||| ||| || || | || || |||||||||||| | |||||||| Sbjct 3983484 GTGCGGGTCCAGCACCTTGTAGCCCCTGGCATTGACCGTGCCGCCGAAGATCTCCCACAG 3983543 Query 75788 AACTTGGA 75795 |||| || Sbjct 3983544 CACTTCGA 3983551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297922857719244