Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq122 664 0.0 seq83 264 2e-65 >seq122 Length=4874392 Score = 664 bits (736), Expect = 0.0 Identities = 812/1098 (74%), Gaps = 21/1098 (2%) Strand=Plus/Plus Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367 |||||||||||| | || ||| |||| ||||| | |||| || |||||||| || | Sbjct 2807681 GAACCGATGTTCTTCGGACAGCCGGTAAACGTGGCGCGTTTCGACCAGCAGAAATATGAC 2807740 Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427 || ||||||||||| || || || || || ||||||||||| || ||||| ||||| Sbjct 2807741 ATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGAC 2807800 Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487 || |||| || ||||| |||| |||| | ||||||| || |||||||||||||| | Sbjct 2807801 GTCTCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATC 2807860 Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547 |||||||| || || || ||||||||||| |||||||| || |||||||||||||| Sbjct 2807861 AGCAACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCG 2807920 Query 71548 TTGCTGCCGATCTGTTCT--ATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCT 71605 ||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 2807921 TTGCTGCCG--CTGATCTCGATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTCT 2807978 Query 71606 CTGAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCT 71665 | || || || |||||||| || |||||||| || || ||||||||| ||| ||||| Sbjct 2807979 CCGAGACTATCCACTCGCGTTCGTACACCCATATTATTCGTAATATCGTTAACGACCCGG 2808038 Query 71666 CCATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCGTCA 71725 | | || ||||| || ||||| |||||||| || ||| | || || | || Sbjct 2808039 CGCTGGTCTTTGACGATATCGTCACCAACGAGCAGATCCTGTCACGCGCCAAAGATATCT 2808098 Query 71726 CGGAGTATTACGACCAGCTGATCGAAATGACCATGTACCTCAACTTACTGGGTGAAGGTA 71785 | | || |||||| | |||||||||||||||| ||| | | ||||||||||| | Sbjct 2808099 CTGGCTACTACGACGATCTGATCGAAATGACCAACTACTGGCATCTGCTGGGTGAAGGCA 2808158 Query 71786 CTCATGTAATCAATGGTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGTCT 71845 | || | || || | || ||| |||| || | || | | ||| Sbjct 2808159 CGCACCAGGTTGCGGGCAAAACCGTGACCGTCAGCCTGCGCGCGCTGAAAAAGCAGCTCT 2808218 Query 71846 ACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCCT 71905 | | ||| | || ||||||| | ||||||| |||||||| || ||| || |||| Sbjct 2808219 ATATCTGCCTGATGAGCGTCAACGCGCTGGAAGCGATCCGCTTTTACGTCAGCTTCGCCT 2808278 Query 71906 GCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACTGA 71965 |||| || |||||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 2808279 GCTCTTTCGCCTTTGCCGAGCGCGAACTGATGGAAGGCAATGCCAAAATCATTAAGCTGA 2808338 Query 71966 TCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAAT--GAA 72023 ||||||| |||||||| ||||| ||||||||||| ||||| ||| | | | | | | Sbjct 2808339 TCGCCCGCGATGAAGCTCTGCACCTGACCGGCACTCAGCATATGCTGAACCTGCTGCGCA 2808398 Query 72024 GTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATA 72083 || || | |||||| | || ||||| || || | ||||||||| ||| || Sbjct 2808399 GT--GGGGAAGACGATCCGGAAATGGCCGAGATTGCTAAAGAGTGCCGTCAAGAGTGCTA 2808456 Query 72084 CGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGA 72143 || || || | ||||| |||||||||||||| |||||| | ||||| ||| | Sbjct 2808457 CGATCTGTTCGTGCTGGCTGCCGAGCAGGAGAAAGAGTGGGCGGAATATCTGTTCAGCGG 2808516 Query 72144 CGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAA 72203 ||| || ||||| || ||||| ||||| || |||| |||||||| || ||||||||||| Sbjct 2808517 CGGTTCAATGATTGGCCTGAATAAAGATATTCTGTGGCAGTACATTGAGTACATCACCAA 2808576 Query 72204 CATCCGTATTCGCGCCATCGGTTACGATGACATCTACGCCGGTGTCAAA---GCT--AAC 72258 ||||||||| ||| | ||| || |||| ||| || | ||| ||| ||| Sbjct 2808577 CATCCGTATGAACGCTGTTGGT----CTG-GATCT--GCC-GTTTAAAACCCGCTCGAAC 2808628 Query 72259 CCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAA 72318 || ||||| ||||||||||| ||| |||| || || |||||||| || ||||| |||||| Sbjct 2808629 CCGATCCCGTGGATCAACTCGTGGCTGGTGTCCGATAACGTGCAGGTTGCTCCGCAGGAA 2808688 Query 72319 GTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTCGAAAGTGGACGCCAACGATTTC 72378 |||||||| || ||||| |||||||| ||||| ||||| |||| ||||| |||| || Sbjct 2808689 GTGGAAGTCAGCTCTTACCTGGTCGGACAGATCGACTCTGAAGTCAACGCCGACGACCTC 2808748 Query 72379 GACGATTTCCAACTGTAA 72396 ||| ||| |||||||| Sbjct 2808749 AGCGACTTCGAACTGTAA 2808766 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 2497399 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 2497458 Query 165254 GCTAGACCAGCCAAA 165268 | ||| ||||||| Sbjct 2497459 GTCAGAGGAGCCAAA 2497473 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 1434233 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 1434174 Query 165254 GCTAGACCAGCCA 165266 | ||| ||||| Sbjct 1434173 GTCAGAGGAGCCA 1434161 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 2544458 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 2544517 Query 165254 GCTAGACCAGCCA 165266 | ||| ||||| Sbjct 2544518 GTCAGAGGAGCCA 2544530 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 2590690 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 2590749 Query 165254 GCTAGACCAGCCA 165266 | ||| ||||| Sbjct 2590750 GTCAGAGGAGCCA 2590762 >seq83 Length=912621 Score = 264 bits (292), Expect = 2e-65 Identities = 458/654 (70%), Gaps = 14/654 (2%) Strand=Plus/Plus Query 71566 ATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGC 71625 ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||| || Sbjct 581888 ATCCCGGAACTGGAAACATGGGTTGAAACCTGGGCGTTCTCCGAAACGATCCACTCACGT 581947 Query 71626 TCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCCATCGTGTTTGATGACATC 71685 || ||||| || || || ||||||||| | | ||||| | | || || || || ||| Sbjct 581948 TCTTACACTCATATTATTCGTAATATCGTGAACGACCCGGCTCTAGTATTCGACGATATC 582007 Query 71686 GTGACCAACGAACACATCAAAGCG-CGTGCTGAGTCCGTCACGGAGTATTACGACCAGCT 71744 ||||| || || || ||| ||| |||||||| | | |||| || ||| | || Sbjct 582008 GTGACGAATGACCAGATC-CTGCGCCGTGCTGAAGATATTTCTAAGTACTATGACGACCT 582066 Query 71745 GATCGAAATGACCATGTAC-CTCAACTTACTGGGTGAAGGT-AC--TCATGTAATCAATG 71800 |||||||||||||| ||| || ||| | ||||||||| || ||| || || | Sbjct 582067 GATCGAAATGACCAACTACTGGCATCTT-TTAGGTGAAGGTGACCATCAGGT-TGCA--G 582122 Query 71801 GTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGTCTACCTGTGCATCGTGT 71860 | || | || || || |||| | | ||| | | | ||||| ||| | || Sbjct 582123 GAAAAACCGTGACCGTTTCCCTGCGCGGATTAAAGAAACAGCTTTACCTCTGCCTGATGA 582182 Query 71861 CGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTG 71920 ||||| | | |||||||| || ||||| || ||||| || || || || || | Sbjct 582183 GCGTCAATGCCCTCGAAGCCATTCGTTTCTACGTGAGCTTTGCTTGTTCATTCGCGTTCG 582242 Query 71921 CTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACTGATCGCCCGTGATGAAG 71980 | || || |||||||||||||| || ||||||||||| || ||||| || || |||| Sbjct 582243 CCGAGCGTGAGCTGATGGAAGGTAATGCCAAGATCATCCGTCTTATCGCACGGGACGAAG 582302 Query 71981 CCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAAT--GAAGTCCGGTGCTGACGA 72038 ||||||| ||||| || || ||||| ||| | | | | |||| ||||| || || Sbjct 582303 CCCTGCACCTGACGGGAACACAGCATATGCTAAATCTGCTGCGAAG--CGGTGAAGATGA 582360 Query 72039 TGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATACGCACTCTTTAAGGA 72098 | | || ||| || || | | ||||| || ||| | | || || || | Sbjct 582361 TCCGGAAATGAAAGAGATTGCTGCTGAGTGCGAGCAAGAGTGCTTTGAGCTATTCAAAAA 582420 Query 72099 CGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGACGGGTCGATGATCGG 72158 ||||| |||||||| ||||| ||||| | || || |||| || || ||||||||||| Sbjct 582421 GGCTGCTGAGCAGGAAAAAGAGTGGGCAGAATACCTGTTCCGTGATGGCTCGATGATCGG 582480 Query 72159 TCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAACATCCGTAT 72212 |||| ||||| || | ||||| ||||||||||| || ||||| || ||||| Sbjct 582481 AATGAATAAAGATATTCTCTGCCAATACATCGAATATATTACCAATATTCGTAT 582534 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 426533 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 426592 Query 165254 GCTAGACCAGCCAAA 165268 | ||| ||||||| Sbjct 426593 GTCAGAGGAGCCAAA 426607 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 400913 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 400972 Query 165254 GCTAGACCAGCCA 165266 | ||| ||||| Sbjct 400973 GTCAGAGGAGCCA 400985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867272898057120