Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq83 178 1e-39 seq122 105 7e-18 >seq83 Length=912621 Score = 178 bits (196), Expect = 1e-39 Identities = 335/493 (68%), Gaps = 0/493 (0%) Strand=Plus/Minus Query 145888 TGGAGAGAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGAT 145947 |||| ||| || | ||| | || |||| | |||||||| | |||| || | |||||| Sbjct 580234 TGGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGAT 580175 Query 145948 TTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGAG 146007 ||| || |||||||| | |||||| | ||||| | || || || ||| || || || Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 146008 TACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACC 146067 || | | | |||||| |||||||||||| || || || ||| |||||| || || || Sbjct 580114 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 580055 Query 146068 GCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAAT 146127 ||| || || ||||| |||||||| || || || || |||| |||||| |||| || || Sbjct 580054 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 579995 Query 146128 AACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACC 146187 | || ||||| |||| || | |||| ||| |||||||| || Sbjct 579994 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 579935 Query 146188 TGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGATTT 146247 || || || ||||| || || |||| || | ||| | || || | || || Sbjct 579934 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 579875 Query 146248 GTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGT 146307 ||| || || | | ||| ||| || |||| ||||| || |||||||| ||||| Sbjct 579874 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 579815 Query 146308 AGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTTCTTAGTTGACACAGC 146367 || || || | || ||||| || || ||||| | |||||||| || ||||| || Sbjct 579814 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 579755 Query 146368 ATCGTAAAAACGA 146380 ||| ||||| ||| Sbjct 579754 ATCATAAAAGCGA 579742 >seq122 Length=4874392 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 74605 AATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCT 74664 ||| ||||| ||||||| ||||| ||||| || ||| ||||||||||||||||||||||| Sbjct 217168 AATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCT 217227 Query 74665 AACCAATTGAGCTATAGGGCC 74685 |||||| |||||||| ||||| Sbjct 217228 AACCAACTGAGCTATGGGGCC 217248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || |||| |||||| | ||||| || ||||||| | || |||||||||| Sbjct 4689834 TGGTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCA 4689775 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 4689774 ACTGAGCTAAGCCGGC 4689759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || |||| |||||| | ||||| || ||||||| | || |||||||||| Sbjct 4696985 TGGTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCA 4696926 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 4696925 ACTGAGCTAAGCCGGC 4696910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554311800917280