Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq122 149 1e-30 seq83 145 1e-29 >seq122 Length=4874392 Score = 149 bits (164), Expect = 1e-30 Identities = 292/425 (69%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 |||||| |||| | || || || |||| | ||||| || |||||| | ||||| Sbjct 2805844 TTCTACGATGCGATCTCCACCTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTG 2805903 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACT-CTTTGCA 78746 || |||||||| |||||||| || || || || |||||| | |||||| | ||| | Sbjct 2805904 CGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTG-A 2805962 Query 78747 TTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGG 78806 ||| || || | | | | ||||| | ||| || | ||||||| |||||||| Sbjct 2805963 TTCCATTAACGCCACCTCCAGCGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGG 2806022 Query 78807 TGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAG--ATTC 78862 |||||| |||| || ||||| |||||| | | || ||||| |||| Sbjct 2806023 CATTAACGCCGGTCGCATCCGTGCGCT--GGGCAGCCCGATCCGCGGCGGTGAAGCATTC 2806080 Query 78863 GTCACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTC 78922 ||||| || ||||| |||| || ||||| || || ||||| || || || |||| Sbjct 2806081 --CACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTC 2806138 Query 78923 AAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTG 78982 | || || || || || ||||| ||||| || ||||| || ||||| | ||||| | Sbjct 2806139 AGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGTGG 2806198 Query 78983 AAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTG 79042 ||| ||| | || |||||||||||| || ||||||| ||||| | |||||| | | Sbjct 2806199 AAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGG 2806258 Query 79043 ACTAC 79047 ||||| Sbjct 2806259 ACTAC 2806263 Score = 114 bits (126), Expect = 2e-20 Identities = 236/350 (67%), Gaps = 1/350 (0%) Strand=Plus/Plus Query 188168 TGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGT 188227 ||||| || ||| | |||||| ||||| |||||||| || || || ||| ||||| Sbjct 3821176 TGGAAGGAGGAGACCGACTACGGCTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 3821235 Query 188228 GATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATCAATGACAAA 188287 || || ||||| || |||||| | ||| || || | | || ||| |||||| Sbjct 3821236 GACCGCTTCTGCCGCCTCGACGCCGCCGAATTTGGCGTGGTGCCGGGCGTCACCGACAAA 3821295 Query 188288 GACTATTACACAAACTCGTTTCACTTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAA 188347 | || ||||| ||| || ||| | ||||| || || ||||| || | || ||| Sbjct 3821296 GGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATCCGTACGACAAA 3821355 Query 188348 ATTGATTTTGAAGCTGCATACCCAATTCATGCAAACGGTGGTTTCATCTGTTATGCTGAG 188407 || || |||||||| | || || || ||||| ||||| ||||| || | ||| Sbjct 3821356 ATCGACTTTGAAGCGGGCTATCCGCCGATCGCCAACGGCGGTTTTATCTGCTACGGCGAG 3821415 Query 188408 TTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGCGCGTATGGGATTATGCTTACACT 188467 | ||||||||| | ||||| | || | || ||| ||| |||||||| |||| Sbjct 3821416 TACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATTACAGCTACAGC 3821475 Query 188468 AAAGTAGCTTACTTCGGTACGAATACCCCGATTGATCAGTG-TACGTGTG 188516 || | || | ||| || || |||||||||||| | || |||| ||| Sbjct 3821476 CGCGTGCCCTATTACGGCACCAACACCCCGATTGATGAATGCTACGAGTG 3821525 >seq83 Length=912621 Score = 145 bits (160), Expect = 1e-29 Identities = 328/491 (67%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 78627 CTTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGT 78686 ||| || |||| || ||||| ||| |||| ||||| || || || ||||| || || Sbjct 579745 CTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGGGGT 579804 Query 78687 TCGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCA 78746 || || ||||| ||||| || || || || || || || | ||||| || | Sbjct 579805 ACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTTAGA 579864 Query 78747 TTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGG 78806 || ||||| | ||| | || || | ||| || | || ||||| ||||| Sbjct 579865 CTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGATCGG 579924 Query 78807 TGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAGATTCGT 78864 | | || | || |||||||| ||| ||| | | ||| ||||| | Sbjct 579925 TATCAATGCTGGCCGTATTCGTGCGCTAGG--CAGCCCAATCCGTGGTGGTGAAGCTTTC 579982 Query 78865 CACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAA 78924 || || ||| || || |||| |||||||| || || || || ||||| || || ||| Sbjct 579983 CATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCAA 580042 Query 78925 GGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAA 78984 || || ||||| |||||||| ||||| || |||||| || |||||||| ||| ||||| Sbjct 580043 GGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGAA 580102 Query 78985 AAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGAC 79044 | | ||||| ||||| || ||| |||||||||| |||||| | ||||| || || Sbjct 580103 AGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGAT 580162 Query 79045 TACAGTGTATCAATCAGTCGATTGATGCTTGAGCGTCTTGTGAATAACGATTACATCACG 79104 ||| | ||| ||||| | | ||| | | ||||| || || || | ||| || Sbjct 580163 TACGGCGTACAAATCAACAAACTCATGTATCAACGTCTGGTAAAAGGCGGCGATATCTCG 580222 Query 79105 CTATTCAGTCC 79115 ||||||||||| Sbjct 580223 CTATTCAGTCC 580233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790094940599520