Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq122 471 9e-129 >seq122 Length=4874392 Score = 471 bits (522), Expect = 9e-129 Identities = 1137/1688 (67%), Gaps = 66/1688 (4%) Strand=Plus/Plus Query 15877 TACCACCACGGCGTACGCGTCATCGAAATCAACGGCGGCGTGCGTCCGATCCGCACTGTG 15936 || |||||||||||||||||| | |||||||| | ||| || || ||| || Sbjct 199787 TATCACCACGGCGTACGCGTCGTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTA 199846 Query 15937 GCCACCGCTATCGTCGGCGTCGTCTGCACCGCGCAGGACGCAGACGCCACGCTGTTCCCC 15996 |||| |||| |||||| | |||||||| || ||| || || ||||| | ||||| Sbjct 199847 TCCACTTCTATTGTCGGCATGGTCTGCACTGCAGCGGATGCTGATGCCACCGTATTCCCG 199906 Query 15997 CTCGACCGACCGGTGCTGCTGACCGACGTGCTGGGCGCCGTCGGCAAGGCCGGCACCAGC 16056 ||| || ||||||||| | |||||||||| || || || || || ||||| |||| Sbjct 199907 CTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGC 199966 Query 16057 GGCACGCTGCGCGCCA-CGCTGCAGGCCATTGCCGACCAGGCCAACGCCATTACCGTGGT 16115 ||||||||| ||| | |||||||||| |||||||||||| ||| | | || ||||| Sbjct 199967 GGCACGCTG-GCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACGGTGGT 200025 Query 16116 GGTGCGCGTCACCGAAGGTTCCGACGACAGCGCCA-CCACCGCCAACGTGATCGGCAAGA 16174 ||||||||| || ||| ||||| |||| || ||||| ||| | |||||| | Sbjct 200026 GGTGCGCGTTGAGGAGGGTGAAGACGA-AGCGGCAACCACCAGCAATATCATCGGCGGCA 200084 Query 16175 AGGACGG---CGCCACCTTCACCGGCATGCAGGCGCTGCTGGTGGCTGAGGCGCAGGTAG 16231 || | || | || |||||| ||| | |||||||| | ||| || | | | | Sbjct 200085 GCGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCGACCTTG 200144 Query 16232 GCGTGCGTCCGCGCATCCTCGGCGCACCCGGTCTGGACACCCAGCCGGTTTCGGCCGCAC 16291 |||| ||||| || ||||||| || || ||||| | | | || | |||| | Sbjct 200145 GCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGCGC 200204 Query 16292 TGGCGGTCATCGCCAAGAAGCTGCGCGCGATGGCCTACGTGAGCTGTGC---CGCCAGTG 16348 |||||| ||| | || |||||||||| | | ||| | || || || | || Sbjct 200205 TGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATAT---CTCGGCTTACGGCTGTA 200261 Query 16349 CCTCGGTCAGCGAGGCCATCGCCTATCGCGAGCAGTTCAGCCAGCGCGAGCTGATGCTGA 16408 |||| ||||| || || |||||||| | ||||||||||||||||||||| ||| Sbjct 200262 AAACGGTAAGCGATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCGCGAGCTGATGGTGA 200321 Query 16409 TCTATCCCGACTTCGTCGCGTTCAACACTGCCGACGCCACCAC--CAGCATG-GCGTTCG 16465 ||| |||||||| ||||| | ||||| | ||| || | | | | | || | | Sbjct 200322 TCTGGCCCGACTTTGTCGCCTGGAACACCGT-GAC--CAGCGCGGCGGAAACTGCCTATG 200378 Query 16466 CGACCGCCCGCGCCCTGGGCCTGCGCGCGATGATCGATGAGCAGCAG-GGCTGGCACAAA 16524 | |||||||||||||| ||||||||||| | |||||| | | ||| |||||||| ||| Sbjct 200379 CCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGA-CAGCGGCTGGCATAAA 200437 Query 16525 TCGATCTCCAATGTGGCCGTCGCCGGCGTGACCGGCAT--CAGCCGCGACGTGCACTGGG 16582 | | || || || | |||| ||||||||||||| | | ||| || || ||||| Sbjct 200438 ACCCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTCCGCCTCG--GTATTCTGGG 200495 Query 16583 ACCTGCAAGATCCGGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCACCACCCTCA 16642 ||||||| | || |||||| || | |||||||| | ||| | ||||||| || | Sbjct 200496 ACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAAGCCAGCGTCACCACGCTGA 200555 Query 16643 TCAACTCCAACGGTTACAAGTTCTGGGGTTCGCGGACCTGCAGCGACGACCCGCTGTTCG 16702 || | |||||| | |||||||| || ||||| ||||| ||||||||||||| Sbjct 200556 TCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGCTGTTCG 200615 Query 16703 CCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATTGCCGAGGCGCAGA 16762 |||| || | ||| ||| | |||||| | | ||||||||||| ||||| ||||| | Sbjct 200616 CCTTTGAAAACTACACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATGCGCATA 200675 Query 16763 TGGTGTACATCGACAAGCCCGAGCATCCGTCGCTCATCCGCGACATGCTGGAGAGCATCA 16822 || | || ||||||||| | ||| |||| | |||||||| | | | |||| Sbjct 200676 TGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCGGGATCA 200735 Query 16823 ATGCCAAGTTCCGCGAGCTGGTGAACGCCGGCTACGTGGCTGGTGC--ATCGCT-GTACG 16879 | ||||||||||| |||||| | |||||||| || || || || | ||| ||||| Sbjct 200736 ACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCCAACTGCTGGTACG 200795 Query 16880 ACGAGCG-GCCAACGAGCCCAGCCAG-CTG-AGGCTGG---GGTGACAATCGACTACGAC 16933 |||| | |||||| |||| | || ||| | || || | || |||||||||||| Sbjct 200796 ACGAAAGCGCCAAC-AGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACTACGAC 200854 Query 16934 TACACGCCGGTACGCCCGCTGGAGAACCTGGTCCTGAACCAGCGCATCACCGACCGCTAC 16993 || || ||||| | |||||||| | ||| |||| |||||||| |||||| ||||| Sbjct 200855 TATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACAGCTAC 200914 Query 16994 TTCGCCGACTTC-CCGGCCGTATCAACGGCTGATGCCGTACTGAGGAACCATTCCCATGT 17052 | || ||||| ||| | | ||| || || ||| |||| | |||| Sbjct 200915 CTGGCGAACTTCGCCGCTTCTGTGAACAGC--------TAAGGAGAAACC---CTCATGG 200963 Query 17053 CCATGCCCAGCAAGCTCAAGAATCTCAACCTGTTCAACGACGGCCTCAGCTACCTGGGCC 17112 | |||| | || || || | || || |||| ||||| | | |||||| | ||| Sbjct 200964 CACTGCCTAAGAAACTGAAATACCTGAATTTGTTTAACGATGCCAACAGCTATCAGGGTG 201023 Query 17113 AGGTCACCGAGGTCAAGCTGCCGACCTTGACCCGCAAGATGGAGGAATACCGCGCCGGCG 17172 ||| ||| | | |||||||| || | |||||| | || ||||||| ||||| Sbjct 201024 TGGTGACCTCACTGACGCTGCCGAAGCTGGCGCGCAAGCTCGACCCTTACCGCGGCGGCG 201083 Query 17173 GCATGCTCGG------TCCCATCGATATTGACCTCGGCCAAGAGAAAATCGAACTGGAAT 17226 ||||| ||| | ||||||| || ||| | | || | || ||||| | Sbjct 201084 GCATGAACGGCGTGGCGCATATCGATAATGGCCTGGAAGATGATGCGCTGGATCTGGAGT 201143 Query 17227 GGAAGTGTGGCGGACT-GATGCGCGACGTGCTGCGCCAGTACGGCGCCATCGCCCACAAC 17285 ||| ||| || || | || ||||||| |||||| || | |||| || Sbjct 201144 GGACCATCTCCGGCCTCGACGACCG-CGTGCTGAGCCAGTGGGGTG---GCGCC----AC 201195 Query 17286 GCCGTGCAGCTGCGATTCGCTGGCGCCTATCAGCGCGAAGACAGCGCAGACGTGGACTCG 17345 | |||| |||||| || || |||| ||||| || |||| || || | || Sbjct 201196 G--GTGCCGCTGCGCTTTATGGGTTCCTACCAGCGTGACGACACCGACGAGACCATCGCG 201253 Query 17346 GTCGAGATCGTCATCCGCGGCCGTCA-CAGCGAGATCGACGCCGGCACCGGCAAGGTCGG 17404 || ||| | | | |||||| || |||| || ||||| |||| ||||| || Sbjct 201254 GTGGAGGTGGAGCTGCGCGGCAAGCATCAGC-AGTTCGACTTCGGCGAGAGCAAGCAGGG 201312 Query 17405 TGACGACACCGAGTTCAGCGTGAAGACCACCGCCAGCTACTACAAGCTGAGCATCAATGG 17464 ||| || | ||| || | | |||| || |||||||||||||||| || || Sbjct 201313 TGAGGAGAACGAAACCAAAATCACCACCAAATGCACCTACTACAAGCTGAGCTGGAACGG 201372 Query 17465 CCGTACCGAGATTGAAATCGACATGGTCGGCATGGTGTTCATCGTCAACGGCGTGGACCA 17524 | | |||||| ||||||| ||| |||||| ||||| |||||| | |||| Sbjct 201373 CAAAGCGCTGATTGAGATCGACACCGTCAACATGGTCGAGATCGTGAACGGCATCGACCG 201432 Query 17525 GCTGGCCG 17532 ||||||| Sbjct 201433 CCTGGCCG 201440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107150430294922