Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023601.1 Length=97906 Score E Sequences producing significant alignments: (Bits) Value seq122 96.9 2e-15 >seq122 Length=4874392 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 11105 GTTGCTTTCACAGCGAAGCCGAAAACATCACGTGTCACACACTGGTAGGTGTAAGAACCA 11164 || ||||||| ||||| || || ||||| || ||||||| || ||||| || Sbjct 3983320 GTCGCTTTCATGGCGAAACCAAAGGTGTCACGCGTGTTGTACTGGTACGTATAAGACCCG 3983379 Query 11165 ACACCAAACACAACGTTTGCAGCAG-CGTAGCCATTCTCAGCCAAACGACGCAGGATTTC 11223 || || ||||| || || || || | | |||| || | ||| ||||| |||||| | Sbjct 3983380 ACGCCGAACACCACATT-GCTGCTGGCAAAGCCTTTGGCCTCCAGACGACTCAGGATCTG 3983438 Query 11224 TTCTGCACGCTTGGTGGTGATTGAGTCACCATAGATCAGACCGATGTGCGAGTCAAGCAG 11283 | ||||||| | ||| || ||||| || ||||||||||| | ||||| ||| |||| Sbjct 3983439 ATTGGCACGCTCGAGGGTAATCGAGTCGCCGTAGATCAGACCCACGTGCGGGTCCAGCAC 3983498 Query 11284 TTTGTGACCTGTTTCAGTGATAGTGCCACCGAAGGTTTTCCACAG 11328 |||| || | || ||| ||||| |||||| | | |||||| Sbjct 3983499 CTTGTAGCCCCTGGCATTGACCGTGCCGCCGAAGATCTCCCACAG 3983543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313150495300181