Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq122 275 9e-69 seq83 212 9e-50 >seq122 Length=4874392 Score = 275 bits (304), Expect = 9e-69 Identities = 432/611 (71%), Gaps = 12/611 (2%) Strand=Plus/Minus Query 87330 CTGACAGAGCTCAGAGCGCACGCAGTCATCCTTCGTGAACTCTACAACCCCAATGCGGGA 87389 ||||||||||| ||| ||||||||||| || || ||| || || | | | Sbjct 1498617 CTGACAGAGCTGAGAACGCACGCAGTCCTCTTTTCCGAAACGGACCACGCTCAC-CATCT 1498559 Query 87390 CGTGGTACTGAAA-CGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAAT 87448 ||| || ||| || ||| |||||||| | || || || || |||||||| Sbjct 1498558 CGTCGTCCTGGAAGCGCGACAGCGCGTCAGCCAGGCCGGACTGAACATGGGACGGTAAAT 1498499 Query 87449 CACACTGAGCCACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGA 87508 ||||||| | | || ||||||||||| ||||||||||| || || || || ||||||| Sbjct 1498498 CACACTGGGTGATATCGCCGTTAACAATGACGGTCACGTTTTCCCCAAGGCGCGTCAGGA 1498439 Query 87509 ACATTTTCATCTGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCT 87568 |||| ||||| || || ||| |||||||| || || ||||| || || || ||||| | Sbjct 1498438 ACATCTTCATTTGGGCGGCGGTGACGTTCTGCGCCTCATCCAGAATCACCACGGCGTTTT 1498379 Query 87569 CAAACGTGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGC 87628 ||||||||||||| |||||||| || || || ||||||||||| || | || || | Sbjct 1498378 CAAACGTGCGGCCTCGCATATAGGCAAACGGCGCAATTTCCACTTTGCCAATTTCGGGAC 1498319 Query 87629 GCAAGCAGTACTGAAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGC 87688 ||| ||||||||| | || | | ||||| ||||| |||| | ||| | ||||| | Sbjct 1498318 GCAGGCAGTACTGCATAAAGGAAGAGCCAAGACGTTTAACCAGAACGTCATATACCGGCC 1498259 Query 87689 GGAAATACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGG 87748 ||||||||||||||||||| || ||| ||||| || | ||| |||| | |||| | | Sbjct 1498258 GGAAATACGGGGCGAATTTTTCTGAGATATCCCCTGGAAGGAATCCCAAATCCTCATCCG 1498199 Query 87749 ACTCTAAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGG 87808 || | || || || ||||| || || | || || || |||| | || || | || Sbjct 1498198 CCTGAAGTACCGGGCGAGTCACTATAATCCTGTCAACATCCTTATGAATCAGGGCCTCGG 1498139 Query 87809 CCGC--GTGCGCAGTTGA--CAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAG 87864 |||| |||| | ||| ||| |||||||||||||| ||||| ||||| || ||| Sbjct 1498138 CCGCTTTTGCGGCGCTGATCCAG----GTTTTACCACAACCTGCTTCGCCCGTAGCGAAG 1498083 Query 87865 ATTAATTGCTTCGTGTTCAGCTGC-TCGAGGTAAAGTACCTGGTTTTCATTGCGCGCTTC 87923 || | |||||| || ||| || | ||| || | |||| |||||| | ||||| Sbjct 1498082 ATCAGTTGCTTGGT-TTCTATGGCGTTGAGATAGTGCGCCTGAGCTTCATTTCTAGCTTC 1498024 Query 87924 GATGGGTGTAT 87934 || |||| || Sbjct 1498023 AATCGGTGAAT 1498013 Score = 118 bits (130), Expect = 1e-21 Identities = 200/287 (70%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 93443 TGCTGGATACCCTTGACTCGAAGATTGACCAGTGGTACGCCAGTGGTTGTACTGGCGATG 93502 || |||| ||||| |||| || |||||||||||||| || | || | || || | Sbjct 2638022 TGATGGACACCCTCGACTGTAAAATTGACCAGTGGTATGCGCTGCGCTGCAGCGGTGACG 2637963 Query 93503 TCATCAAAGGGTATTGGTCGGGGCGTGCCGC-GGGCGTATGGGACCACATGACGGCGGTG 93561 | |||||| |||||| || ||||| |||| |||||||||| || || | Sbjct 2637962 TAATCAAATCCGTCTGGTCGAA-CGCGCCGCAGGGCAAGTGGGACCACAGCACCGCCATC 2637904 Query 93562 GAGCTGAGTAACTTTAACGTCCAGAACTGTCGGGGCGGAAAGGTACTGAACTTGCCGCGT 93621 |||||| ||||||||||| ||| |||| | || || || || ||| ||| ||| Sbjct 2637903 GAGCTGTCTAACTTTAACGCGCAGTACTGCACCGAAGGGAAAGTCCTTAACCTGCAGCGC 2637844 Query 93622 TGCACGCAATCCTTCATCTGGAACGGCTGGATTGAGCACAGTGACAACCCAGGCGACCTG 93681 ||| || || | ||| ||||||||||| ||||| | || ||| |||||| | Sbjct 2637843 TGCGGTCAGTCGCTGATCCACAACGGCTGGATCGAGCATACCGAATTCCCCGGCGACATC 2637784 Query 93682 TCGAACGGCCAGTGGATTATCAACGGACTGAACATCGAAGACTGTAA 93728 || |||||||||||||||||| | | |||| | | ||| |||||| Sbjct 2637783 TCCAACGGCCAGTGGATTATCGATGCCCTGAGCCTGGAAACCTGTAA 2637737 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 92156 GCCCACTCGTTCCAGATGGTAACCCCTTCTTTGGC--CAACTCTCGGTTGTCCGTGGAAC 92213 |||||||||| |||||| | || |||| ||| | || | | ||| ||| || Sbjct 3442592 GCCCACTCGTCCCAGATCG--ACACCTTATTTTCCTTCAGGTAGGCGATGTTGGTGTCAC 3442649 Query 92214 CCTGCATGAACCAGAGCATCTCGTGAATGATGCTGCGCAAGTGAACTTTCTTGGTGGTGA 92273 | | | |||||| |||| ||| |||||||| |||||| || ||||||||||||| Sbjct 3442650 CGTTAAGGAACCACAGCAGCTCATGAATGATAGAGCGCAAATGGCACTTCTTGGTGGTGA 3442709 Query 92274 CTAGCGGAAACCCGTCCGCGAGGTTAAAGCGCATTTGGTGACCAAAGAT 92322 | |||||||| |||||| || || || ||||| || |||||||| || Sbjct 3442710 CCAGCGGAAAACCGTCCTGCAGATTGAAACGCATCTGATGACCAAAAAT 3442758 >seq83 Length=912621 Score = 212 bits (234), Expect = 9e-50 Identities = 333/473 (70%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 87400 AAACGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAATCACACTGAGCC 87459 |||||||| | ||| || | ||| || || || ||| |||| ||||| || | Sbjct 345141 AAACGCTGCATCGCATCAGCAAGCCCGGATTTAACACCTGCTGGTAGGTCACATTGGGTA 345200 Query 87460 ACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGAACATTTTCATC 87519 | || |||||||| ||||||||||| ||||| || | || || |||||||||||||| Sbjct 345201 ATATCACCGTTAACGATCACGGTCACATTCTCCCCTAAGCGAGTGAGGAACATTTTCATT 345260 Query 87520 TGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCTCAAACGTGCGG 87579 |||| ||| |||||||| ||||| || || ||||| | || |||||||| || | | Sbjct 345261 TGTGAGGCGGTAACGTTCTGCGCTTCATCAAGAATAACGAAAGCATTCTCAAAGGTTCTG 345320 Query 87580 CCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGCGCAAGCAGTAC 87639 || |||||||| ||||| || |||||||| || ||| | || ||||| || ||||| Sbjct 345321 CCCCGCATATAAGCGAAAGGTGCAATTTCAACTTTCGCAATTTCAGGGCGTAAACAGTAG 345380 Query 87640 TGAAGGAA--CGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGCGGAAATACG 87697 || | || | ||| |||| |||||| | | | ||| | ||||||||||| || | Sbjct 345381 TGCATAAAAGAGGACC-CCAA-GCGTTTAACTAATACGTCATAGACCGGGCGGAAGTAAG 345438 Query 87698 GGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGGACTCTAAGA 87757 | || ||||| || ||||| ||||| | ||| |||| || ||| ||| | ||| | Sbjct 345439 GAGCAAATTTTTCAGAAATGTCGCCAGGGAGGAAACCCAAGTCTTCATCGGCTTGTAACA 345498 Query 87758 CAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGGCCGCGTGCG 87817 | || || ||||| ||||| ||||| | ||||| | | || |||| || || | | Sbjct 345499 CTGGGCGAGTCACAATGATCCGCTCAATATCTTTGTTAATTAAGGCTTCTGCGGCTTTAG 345558 Query 87818 CAGTTGACAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAGATTAAT 87870 | || | | ||||||||||| || ||||| || || || || || ||| Sbjct 345559 CGGTACTGATCCAAGTTTTACCACACCCCGCTTCGCCTGTAGCGAAAATCAAT 345611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698502111734520