Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq212 150 1e-30 seq64 100 2e-15 seq11 96.9 3e-14 >seq212 Length=676889 Score = 150 bits (166), Expect = 1e-30 Identities = 232/329 (71%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 400295 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTA 400354 |||| || || |||||||| |||||||||||||||||||| || ||| | || || ||| Sbjct 83786 AATGCACTCTCATTTTGACTGAGGGAGATTCAGCTAAAACCTTAGCTGTTTCAGGACTTG 83727 Query 400355 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 400414 |||| | || |||||| |||||||| ||||||||| | || || || |||||||| | Sbjct 83726 GTGTTGTCGGTAGAGATAGGTATGGAGTGTTCCCACTTCGTGGTAAGCTATTGAATGTCA 83667 Query 400415 GGGATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTG 400474 | || ||| | ||| | || ||||||| |||||||| || | | || || Sbjct 83666 GAGAAGCTTCCCACAAACAGATAATGGATAATGCGGAAATTAATGCTTTGATCAAGATCA 83607 Query 400475 TTGGACTTGAAC--AAGGAAAAGTTT----AT---GATGATCTCAAAGGTTTACGATATG 400525 | || || ||| ||| |||||| | || |||||||| ||| | | ||||||| Sbjct 83606 TAGGCCTGCAACATAAGAAAAAGTATGAGAATGTAGATGATCTAAAAACTCTTCGATATG 83547 Query 400526 GTAGTATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCA 400585 | | | ||||| | ||||||| || ||||| | |||||| ||||| ||| | | Sbjct 83546 GCAAGCTCATGATCATGACTGATCAGGACCAGGATGGTTCCCATATAAAAGGCTTATTAA 83487 Query 400586 TGAATTTTATCCATTGTTTTTGGCCATCT 400614 | || || || || | ||| ||||| ||| Sbjct 83486 TTAACTTCATTCACTATTTCTGGCCTTCT 83458 >seq64 Length=1295264 Score = 100 bits (110), Expect = 2e-15 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| || || ||||||||||| || | | || | || | || | | |||| || Sbjct 191492 ACGGTTGTCGAAATCTTCACCACCAAGATGGGTGTCACCAGCGGTGGACTTGACTTCAAA 191551 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | |||||||||| | || | | |||||| || |||||||| | ||| ||||| Sbjct 191552 GATACCATCTTCAATGGTCAGGATGGACACATCAAAAGTACCACCACCAAGATCGAAAAT 191611 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || ||||| | || ||| || || || |||||||| || | ||||||||||| Sbjct 191612 GAGGACATTGCTCTCCTTGCTGCCCTTCTTGTCGAGACCATAAGCGATGGCAGCAGCAGT 191671 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || ||||| | | || || || ||||||| | || ||||| || ||||| Sbjct 191672 GGGCTCGTTGATAATACGGAGGACGTTCAGTGCAGCAATGGTACCAGCATCCTTGGTGGC 191731 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || | || ||||| || |||||||| || || || | ||||| Sbjct 191732 CTGACGCTGAGAATCATTGAAATATGCGGGTACGGTGACTACGGC 191776 >seq11 Length=3525032 Score = 96.9 bits (106), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| || ||||| || | ||| |||| ||| |||||| |||| | ||| Sbjct 609035 ACATCAAAAGTACCACCGCCAAGATCGAAAACAAGGACATTCTTTTC---GCCTTCACGC 608979 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | || || |||| |||||||||||| || ||||| ||||| | || |||||| Sbjct 608978 TTGTCCAACCCGTAGGCAATAGCAGCAGCAGTAGGCTCATTGATAATACGCATAACATTC 608919 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || |||| || | || ||||| || || ||||| | || | ||| || || || ||| Sbjct 608918 AGGCCAGAGATGGTACCAGCATCCTTGGTTGCTTGACGCTGGGCATCATTGAAGTAGGCA 608859 Query 282455 GGAACAGTAATAACGGCAT 282473 || || || | ||| |||| Sbjct 608858 GGGACGGTGACAACAGCAT 608840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740322913167438