Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq45 104 2e-17 seq43 100 3e-16 >seq45 Length=1811775 Score = 104 bits (114), Expect = 2e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTC-GTCGGGCGCGCAATATTGTAC 151335 || ||||||| || || | |||||| || ||| |||| ||||| || | |||| | || Sbjct 849869 TTAACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGG-CGAGGAATACTCAAC 849927 Query 151336 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCG 151395 || || | || | |||||||| ||| || ||| ||| |||||| |||||| Sbjct 849928 AATCTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCG 849987 Query 151396 GTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 151455 ||||||||| || ||||| |||||||| |||||||| ||||| ||||| || ||||| Sbjct 849988 GTTGCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAAT 850047 Query 151456 G 151456 | Sbjct 850048 G 850048 >seq43 Length=2082672 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || |||||||| || | ||| | || || || || || || ||||| || Sbjct 901303 TGCCCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCA 901244 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || |||| ||||| || || || |||||| |||||| ||| |||||||| || Sbjct 901243 GACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGG 901184 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || |||||||||||||| ||||| |||| | || | | || | |||||| Sbjct 901183 GGGATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCA 901124 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||| | |||||||| || | ||| || || || || ||||| Sbjct 901123 ACTTCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488505753111600