Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq122 165 1e-35 seq83 165 1e-35 >seq122 Length=4874392 Score = 165 bits (182), Expect = 1e-35 Identities = 541/828 (65%), Gaps = 21/828 (3%) Strand=Plus/Minus Query 28212 GAAACTACGGCATCCCATTGGGAATTTGAAACTACCAGTCACTTCAACGATCTTATCATA 28271 ||| || ||||| |||||||| ||| || ||| || || | || | || ||||| Sbjct 3820746 GAAGCTGCGGCAGCCCATTGGCGTTTTAAACGAACCGGTGACCTGCACCACCTGGTCATA 3820687 Query 28272 GCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATTCCAGAGCCAACTGTTTGATACG 28331 | || || || || ||||| ||||| ||||| ||||| |||| |||||||||| Sbjct 3820686 ATTGAGGATATCGGGGTACATGCGTTTACTGGCGCACTCCAGCGCCAGCTGTTTGATATC 3820627 Query 28332 ATACAGCGGATCAGTCG----GGTTCAAGTTGTGTCCGTCTTTCAGAGCGAATACCAGTT 28387 || || || | || ||| ||| | ||| |||| | ||||| ||||| | Sbjct 3820626 GTAATTTGGCTC-GCCGCGACGGTG---GTTCAGCCCGGCTTTGATGGCGAACACCAGCT 3820571 Query 28388 TCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCCAAACGAACTTTCAGGATTG 28447 | || || || | || | | |||||| || || || | || |||||| | Sbjct 3820570 TGGGAAACACGGCAGTTTTGTGATTTTTACCCAGCCCGGCGATGCGGTTACGCAGGATCG 3820511 Query 28448 CTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCAAAGCCGAAGGT-ACAGAAC 28506 | || ||||| | ||||||| || || || || ||||||||||| ||| ||| Sbjct 3820510 ACTGCTGGATCAGGCGCGCTGCCCAGCTGGTGCCGAGGCCGAAGCCGAAGGTGACA-AAC 3820452 Query 28507 GGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATACTCCAGACCTTGCATAGCA 28566 || || || || || |||| |||||| || ||||||||||||||||| || | || Sbjct 3820451 GGCGTCTGGCCGTTGGCGGTGTGCAGCGTATTGACCTCATACTCCAGCGACTGAAAGGCG 3820392 Query 28567 TCATAT-ACAGCTTTGCGAGTCTTTGCAATAGCATATTGCTGTTGA-TCTGGAATTTTCC 28624 || || || ||| || || || ||||| ||| | || | ||| | || Sbjct 3820391 TCGTAGCACTCTTTTTCG-GTGCGCGCGCGGGCATAG-GCTTCGGCGTCGGCAATCTGCC 3820334 Query 28625 AGTAACGAGCTTCATCCAAGTGCTTTTCGTG--TGTCATTTTAACATACGGTGCCAGCAC 28682 | | || | ||| ||| | | || ||| || |||| |||||||| Sbjct 3820333 ATTCGTCGGCGGTGGCGCGGTGTTTTGCCAGGCTGGCATCC--ACGAACGGCGCCAGCAC 3820276 Query 28683 TTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCGATGAT 28742 ||| ||||| || || || ||| | || || ||||| || || || || || |||||||| Sbjct 3820275 TTCATCAATACGGTTAATGGTGGTGCCCCCGTAAATATGGCTGGCGACCTGGGCGATGAT 3820216 Query 28743 TTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCATTACC 28802 || || | ||||| | ||||| || || || || | ||||| | || ||||| Sbjct 3820215 CTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTCGATCTCGGCGTTACC 3820156 Query 28803 CATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAACATTGG 28862 |||| |||| || | ||| ||| || | || |||| ||||||||||||||| || Sbjct 3820155 CATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCATGCAGTTAAACATCGG 3820096 Query 28863 GAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCTTGCAT 28922 ||| ||||| || || || |||||||| |||| ||| || || || || | Sbjct 3820095 GAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGATCTCGCCGCGCTCATGGGCGCTGAC 3820036 Query 28923 AACTTCAACAGGCAGATAATGCT---TGGCGAAATGCTTACTAACGATACCAGCTACCAA 28979 || ||| ||||| ||||| |||| | || || ||||| || || | || Sbjct 3820035 CACATCACGCGGCAGCATATGCTGACGGGCGTAGTGTTTGGCGACGATCCCGGCCAGCAG 3819976 Query 28980 ATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATT 29027 |||||| ||||| || || |||||| || || || ||||||||||| Sbjct 3819975 ATCGCGCTGAGTGGGGATCACCTTGCTATCCTTATTGGCATTTTCATT 3819928 Score = 105 bits (116), Expect = 1e-17 Identities = 262/395 (66%), Gaps = 12/395 (3%) Strand=Plus/Minus Query 32827 CCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAAGG 32886 |||||||||| || | | || || |||| || || ||||||||| ||||| || Sbjct 2806265 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 2806206 Query 32887 ATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTACA 32946 | |||| ||||| ||||||||||| || || |||| || || || || || || || Sbjct 2806205 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 2806146 Query 32947 CCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATACCA 33006 |||||||| |||||| || ||||| ||||| |||| || |||| || || || Sbjct 2806145 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCG 2806086 Query 33007 GTATGACGAA--CCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCACCACCAT 33064 || || ||| | || || || || ||| ||||| || ||| | | Sbjct 2806085 GTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 2806028 Query 33065 TGATACCGATACCAGCTCTCTTGCTGATA----TAGTCAACGATAGAACTAGCGGTTGCG 33120 | || |||||||| || | ||||| | || | || || | || | ||| ||| Sbjct 2806027 TAATGCCGATACCGGCAC----GCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 2805972 Query 33121 TTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGGTC 33180 |||||| ||| || || || | |||||| ||||| ||||| ||||| || ||| Sbjct 2805971 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 2805912 Query 33181 GGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 || || || || || | || ||| || ||||| || Sbjct 2805911 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 2805877 >seq83 Length=912621 Score = 165 bits (182), Expect = 1e-35 Identities = 311/454 (69%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 32761 GGACTAAACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATTTTATTGATT 32820 ||||| || |||| ||||| | | ||| |||||||| | | | ||| |||||| Sbjct 580233 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 580174 Query 32821 TGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGC 32880 || | ||||| || | ||| | || || || |||| ||||| ||| || || || Sbjct 580173 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 580114 Query 32881 ACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCA 32940 || | | |||||| ||| | |||||||| || ||| |||| || || || || || Sbjct 580113 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 580054 Query 32941 CGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATA 33000 ||||| ||||| || ||||| ||| || || ||||| |||| ||| |||| |||||| Sbjct 580053 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATA 579994 Query 33001 ATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCACCA 33060 ||| ||||| | | || ||| ||| ||| |||| ||||||||| ||| Sbjct 579993 CAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCCA 579934 Query 33061 CCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGGTTG 33118 ||||||||||||| || || | ||| ||| | || | |||||||| ||||| || | Sbjct 579933 GCATTGATACCGATCCCTGCGC-GTTG-TGAAACGTATTTAACGATAGCACTAGAAGTGG 579876 Query 33119 CGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGG 33178 |||| || || | ||| |||| || || ||||||||||| || || || | Sbjct 579875 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 579816 Query 33179 TCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 |||| || || || ||||||| || || || || Sbjct 579815 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGG 579782 Score = 109 bits (120), Expect = 8e-19 Identities = 147/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 30744 AGCAATGTCAACCATTTCCGAGTCATCATCGCCGTTCTGCCAAGCACGAATGAG---ATA 30800 |||||| || |||||||| ||||| || ||| | || |||| || | || || Sbjct 582382 AGCAATCTCTTTCATTTCCGGATCATCTTCACCGCTTCGC--AGCA-GATTTAGCATATG 582326 Query 30801 CTGAGTCCCTTTCAAGTGCAATTGTTCGTCGCGAGCGATCAAGCGCATGATCTTGGCGTT 30860 ||| || || ||| ||||| |||||| || ||||| | || ||||||||||| || Sbjct 582325 CTGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATT 582266 Query 30861 ACCTTCCATCAAACCACGCTCACCAAATGAGAATGTGCAAGCAAAGCTAACATAGAAACG 30920 ||||||||||| ||||||| | || | ||||| ||||||||||| || |||||||| Sbjct 582265 ACCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACG 582206 Query 30921 CATTGCCTCAAGAGCGTTTACG 30942 || || || || || || ||| Sbjct 582205 AATGGCTTCGAGGGCATTGACG 582184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710235593077680