Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023689.1 Length=76260 Score E Sequences producing significant alignments: (Bits) Value seq122 129 3e-25 >seq122 Length=4874392 Score = 129 bits (142), Expect = 3e-25 Identities = 427/655 (65%), Gaps = 23/655 (4%) Strand=Plus/Minus Query 66168 TGTGGACGTCATTCCCACCGGCTCTATCGCCCTGGACGGCGCTCTGGGCATCGGGGGGTA 66227 |||||| ||| | ||||| || | ||||||| ||| ||||| || || | Sbjct 3357609 TGTGGAAACCATCTCTACCGGTTCGTTATCCCTGGATATCGCACTGGGTGCAGGCGGTTT 3357550 Query 66228 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66287 || | |||||| | || ||||| || ||||| |||||||| || || | || ||| Sbjct 3357549 GCCAATGGGCCGTATCGTCGAAATTTATGGCCCGGAATCTTCCGGTAAAACCACGCTGAC 3357490 Query 66288 TCTCCACG----CGGTGGC-CAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGAC 66342 || || | || || | || ||||| | ||| | | || | ||||| Sbjct 3357489 GCTGCAGGTTATCGCTGCCGCACAGCGCAAA-----GGTAAAACCTGTGCGTTTATCGAT 3357435 Query 66343 GCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTC 66402 || |||||| |||| ||||| | || |||||| ||| || || ||| |||| ||||| Sbjct 3357434 GCCGAGCACGCCCTTGACCCGGTCTATGCCAAGAAGCTGGGCGTAGACATCGATAACCTG 3357375 Query 66403 GTGGTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAA 66461 | || | ||||||||| || || |||||||| ||||| ||| ||| || | Sbjct 3357374 CTC-TGTTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGGCGCG 3357316 Query 66462 GTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGA 66521 || || | | | | | || |||||||||| || ||||| ||| ||| || || Sbjct 3357315 TTCCGGTGCGGTTGACGTGATCATCGTTGACTCCGTTGCGGCGCTGACGCCAAAAGCGGA 3357256 Query 66522 GCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGC 66581 | ||||| || ||||| ||| |||| | ||||| || || | ||| ||||| Sbjct 3357255 AATTGAAGGTGAAATCGGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGC 3357196 Query 66582 CATGCGCAAGCTCACCGGCACCATCTCCAGCAC--CAACACGCTGACGCTCTGGGTCAAC 66639 ||||| ||||| |||| | |||| | || || ||| ||| | ||| ||||| Sbjct 3357195 GATGCGTAAGCTGGCCGGTA--ATCTGAAAAACTCCAGCACCCTGCTGATCTTCATCAAC 3357138 Query 66640 CAGTTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCG 66697 ||| | || ||| || || | || | || |||| || ||||| || || | Sbjct 3357137 CAGATCCGTATGAAAATTGGTGTGATGTTTGGTAA--CCCG---GAAACCACGACCGGTG 3357083 Query 66698 GCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGA 66757 | || || ||| |||||||||||| ||||| ||||| |||| || |||| | | Sbjct 3357082 GTAACGCACTGAAGTTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGATTA 3357023 Query 66758 AGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 66812 | ||||| || || | ||||| | | ||||| ||||| || || || ||||| Sbjct 3357022 AAGAAGGTGACGAAGTGGTCGGTAGCGAAACCCGCGTGAAAGTGGTGAAAAACAA 3356968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243888582487203