Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq109 109 5e-19 >seq109 Length=705085 Score = 109 bits (120), Expect = 5e-19 Identities = 468/728 (64%), Gaps = 19/728 (3%) Strand=Plus/Plus Query 26065 ATGAACAAATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAA 26124 ||||| ||| ||||| || || | | ||| || |||||||| ||||| | ||| | || Sbjct 694753 ATGAATAAACTGAGAGGCATCGAGTAAACTCTCGTGTGTTCCGGTATCTAACCACGCAAA 694812 Query 26125 ACCTCTTCCTAGTTTACAGACACGTAAA-GTCTTTTCTTTCCAGTACATCTCATTTATAT 26183 |||| |||||| | |||| ||| | | ||| || | | ||||||| || || Sbjct 694813 GCCTCGGCCTAGTCTTTCGACATTTAACTGGCCTTT-TTCCAAATACATCTGGTTAATCG 694871 Query 26184 CCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCT-TAGCTTTCTGTATAACA 26242 ||||||| ||||| ||||| | | |||||||||||| || | | || ||| |||| Sbjct 694872 CCGTAATTTCTAATTCCCCCCGTGAAGAAGGTTTAAC-CTGTCTGGCCATCTCGGTAACT 694930 Query 26243 GAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttt 26302 | ||||||||| || | ||| |||| || |||| | ||| | |||||| Sbjct 694931 TGGTGATCGTAAAAATAGAGGCCAGTGACCGCCCAGTTAGATCGTGGCTGCGTCGGTTTT 694990 Query 26303 tCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGA 26362 ||||| | | | | || || | ||| || || || || ||| | | ||||| Sbjct 694991 TCTTCTAGAGAAAGCGCTTTAAACTGTTGATCGAATTCCACCACCCCATAGCGATCAGGG 695050 Query 26363 TCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCA 26422 ||| || ||||| || || | | || || || | || ||| | | Sbjct 695051 TCACGCACTTGATAGCCGAAAACCGTCGCACC-GGAT--------AAATTTTCAGCAACC 695101 Query 26423 GAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCT 26482 || |||| | || ||||| | || || || || | |||||| || || || || || Sbjct 695102 GATACTAACTTACTGCCAAATCCTTGCCCGAAAAAGATATTATCCCCCAGTACCAGCGCG 695161 Query 26483 ACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGG 26542 | ||| | | ||||||| ||||||||| | ||| |||| || | |||| ||| Sbjct 695162 CAATCCTCTCCGGCTATAAAGTCCTCACCAATCAGAAAAGCTTGCGCGAGTCCTTCTGGT 695221 Query 26543 CTATCCTGTATTGCAT-ACTGTAGGGAAATACCAAAAGAAGAACCATC-ACCTAGAAGAT 26600 | ||| | | ||| | | | | || |||||| ||||| || | ||| Sbjct 695222 TTCGGCTGCACTTCATAAGTCAAACGTAA-ACCAAACTGTTGCCCATCTCCCAACAAGCG 695280 Query 26601 TTACAAAATTA-ATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAA 26659 || |||| | | |||| || || ||||| || || | || || | || || | Sbjct 695281 TT--GAAATGACGTCAGATCGTCGGGCGTTGTGATGATCAAGATATCGCGGATCCCTGCG 695338 Query 26660 AGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGT 26719 | ||||| || || || || || || ||||| ||||||||||||| || | || ||| Sbjct 695339 ATCATTAATACCGACAGCGGGTAGTAGATCATCGGTTTATCGTAAACAGGGAGTAACTGT 695398 Query 26720 TTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATA 26779 || || ||||| ||| | |||||||||| ||| || ||||| || | | ||| Sbjct 695399 TTGGAAATCCCTTGAGTGATCGGGTAAAGCCGTGTGCCGGAGCCACCCGCAAGTACAATT 695458 Query 26780 CCTTTCAT 26787 |||||||| Sbjct 695459 CCTTTCAT 695466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 27208 GGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAACT 27267 || || |||||||| || ||||| | ||| |||| || || ||||| |||| ||| Sbjct 695944 GGGATAAGTTTTTCCGGGAACTGATAGGGACCATAATTGTTCGAGCAATTGGTTACAACG 696003 Query 27268 GTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATCGCTTGCAGCTTTAGAT 27327 | || | || ||||||||||| || | || || ||||||||||||||||| || Sbjct 696004 ATTGGCAGCTGGTAGGTACGATGCCATGCACGCACTAAGTGATCGCTTGCAGCTTTCGAG 696063 Query 27328 GCAGCATATGGACTACTTGGTTTATAAGGATTCTGTTCTGTAAACGGATAATCTCCTTCT 27387 || | || || || || || |||||| | ||||| ||||| | || || Sbjct 696064 GCGGAGTAAGGGCTGCTCGGCGCATAAGGCGTTTGTTCGGTAAAAAAGTCATTGGTCTCA 696123 Query 27388 TCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAA 27428 | | ||||||| | |||||||| || || ||||| || || Sbjct 696124 GCTAAATCACCAAAAACTTCATCGGTCGAGATATGGTGAAA 696164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475393179742560