Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq122 248 8e-61 seq83 111 2e-19 >seq122 Length=4874392 Score = 248 bits (274), Expect = 8e-61 Identities = 280/375 (75%), Gaps = 0/375 (0%) Strand=Plus/Minus Query 121985 GATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTACGA 122044 ||| ||||||||||| | || |||||| | ||| || || || || ||||||||||| Sbjct 2808058 GATATCGTCAAAGACCAGCGCCGGGTCGTTAACGATATTACGAATAATATGGGTGTACGA 2807999 Query 122045 ACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGTGTC 122104 ||| ||||| |||||||| ||||||||| || || | ||| |||||||| | | Sbjct 2807998 ACGCGAGTGGATAGTCTCGGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCCGGGAT 2807939 Query 122105 GGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAGGAT 122164 || | | |||||| | | ||||||||| || ||||| | ||||||||| || | Sbjct 2807938 CGAGATCAGCGGCAGCAACGCCACGTTCGGGCTGCGTCCCTGAATAGAGTCCAGCAGAGT 2807879 Query 122165 CTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATGTAGTC 122224 ||||||||||||||||||||| |||||||| || ||||| || || || | ||||| Sbjct 2807878 CTGATACTTCAGGTTGCTGATAAAGATGTGTTTTTCGTGCTCTGGCAGCGCCTGATAGTC 2807819 Query 122225 AATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTTTTC 122284 ||| || || || | |||| ||| |||||||| ||||||||||| | || |||||||| Sbjct 2807818 AATACGATCGCGCGAGACGTCCACTTCTTCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTC 2807759 Query 122285 GATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCGTCTC 122344 |||||||||||| || | | | ||| |||||||| |||| | ||||| || || Sbjct 2807758 GATCAGCTTTTCAAAGATGTCATATTTCTGCTGGTCGAAACGCGCCACGTTTACCGGCTG 2807699 Query 122345 ACCGAGGAACATCGG 122359 |||| ||||||||| Sbjct 2807698 TCCGAAGAACATCGG 2807684 Score = 197 bits (218), Expect = 1e-45 Identities = 862/1337 (64%), Gaps = 84/1337 (6%) Strand=Plus/Minus Query 122864 CCGTTCGTTGAGTTGGTGATCTGACTTGACGTCTCGCACGGCATCATGGTTGACAGCGTA 122923 ||||| || | ||| | |||||| || ||||| ||||||||| || || |||||| Sbjct 2807159 CCGTTGGTGGCGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTA 2807100 Query 122924 GAGTTACGCAGGCCATGGAT----AGCGATTTGAGAGCGAAGCCATTCCCAATCCATCTT 122979 ||||| |||||||| ||| | | ||||| || ||| |||||| |||| | Sbjct 2807099 GAGTTGCGCAGGCCGTGGGTTTTCACCGATTCA----CGCAGCGCTTCCCAGTCCAGC-- 2807046 Query 122980 CAGTTCAGCGGTGTGG---AGATT--ATCCACTTCCTTTTTGTAACGGTCAATAGGCAGA 123034 || |||||| || |||| ||||| ||||| || || ||| || |||| | Sbjct 2807045 -AG--CAGCGGCGTATCACAGATCGCATCCAGGTCCTTCTTATAGGTGTCGATCGGCATA 2806989 Query 123035 ATGCCTTGGGAGTATGAGGTTTGGTCATACAGCTTACACTTCCCAAGTTCCTTCGCCAGA 123094 || || || | || | ||||| || | || | || || |||| | |||||| Sbjct 2806988 ATACCCTGCGCATAGGTGGTTTCGTTAAACCACGGGCAGGCACCCTGTTCGATAGCCAGA 2806929 Query 123095 TCCATCGACGCTTCCAGCAGGTAGAACTGGAATGCTTCTG----CCAGTTCGTGAACCGC 123150 || | || |||| ||||| || |||| | ||||| | || ||| | | Sbjct 2806928 TCGTTAGAGGCTTTCAGCAACCAGTACTGAATGGCTTCAAAGGTCTGGTGCGTCAGGA-C 2806870 Query 123151 ATT--CGCAGCACGAGGATCACTGTACTTCAGTCCACGCTTCGCCAAGTAATACGCCAGG 123208 ||| ||| || ||| ||| || || |||||||| ||| || || | Sbjct 2806869 ATTAGCGCTGCCGTCGGA-----GTAACGCACGCCGTTCTTCGCCAGGTAGTAAGCGTAG 2806815 Query 123209 TTGGTCCAGCCAATACCCAGCGTTCGACGATCCTTAGT-CTTCTCTGCC--GCCAGTACC 123265 ||| || |||||||||||| || || ||| || | | | | |||| ||| | | Sbjct 2806814 TTGATCACGCCAATACCCAGAGTACGGCGACCCATTGCGCCACGCTGCGCGGCCGGGATT 2806755 Query 123266 GGGTAGTTCTGGTAGTCCAACAGACGGTCAAGTGAGCGCACC---AAGGTGCGTACCGGG 123322 ||||||| ||||||||||| ||| || || | |||||| | ||| | || | Sbjct 2806754 GGGTAGTCCTGGTAGTCCAGCAGGGCATCCAGCGCACGCACCGCCAGGGT---TGCCAGC 2806698 Query 123323 CCACGGAGGTCTTCCAGACTCTCTACCTTGCCGAGGTTGATTGCAGACAGCGTACAAAGT 123382 | | ||||| ||||| ||||| | | ||||||||| | || ||||||||||| || Sbjct 2806697 TCCTGCAGGTCGTCCAGGCTCTCAATCGCGCCGAGGTTAAACGCCGACAGCGTACAGAGC 2806638 Query 123383 GCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTCATTGATCGCGTGAGTAGGCAGGGCA 123442 || || ||||||| || || || | || | || | || ||||| || Sbjct 2806637 GCGATTTCGCCATTTTCGTCG------TTAACATCCAGCAGCGGTTTGGTCGGCAGTGCG 2806584 Query 123443 ATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCCAGTTCTGGATTGAACGGGCTGTTG 123502 ||||||| ||||||||| ||||| ||| || || | | | || | || ||||||| | Sbjct 2806583 ATCTCCAGGCACAGGTTAGACTGGCGCACTGGCGCGATTGCCGGGTCAAATGGGCTGTGG 2806524 Query 123503 GTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGTCCTGTCTGACTGCGCTCCTGCATA 123562 ||||||||||||||||||| |||||||||||| || || || ||| |||||||| Sbjct 2806523 GTGTTGCAGTGGTCAACGTTCTGAATGTAGATACGGCCGGTAGAGGCGCGTTCCTGCATC 2806464 Query 123563 GCCACGGAGAAGGCTTCTGCTGCGGAGATGCTTTTCTTAGCCACTTCCGGATCGGCT--- 123619 || ||||| ||| | || | || | ||| || | | | ||| || Sbjct 2806463 ATCAGCGAGAACAGATCTACCGCCTTCACGCGCTGCTT-GCGGATGCTG--TCGTCTTTC 2806407 Query 123620 TCCAACTTCTCGTACAACTCTTCAAATTTCTTCTGGTCGGAGAAGAAATACTCGTAC-AG 123678 || | || ||||| ||||| | | ||| |||| |||||| || ||| || Sbjct 2806406 TCGTATTTGGTGTACAGGCGCTCAAACTCATCCTGATCGGCGAAGAACGCGTCATACAAG 2806347 Query 123679 CTTGCCACCTGCAACGTTCGGGTGGAACAGAGTGATAT-TTCGCCCATGTTGCAGACGTG 123737 | | ||| | || |||| ||||||||| || | ||| ||| | |||| || Sbjct 2806346 CCAGGCACGT----CGGACGGGCTGAACAGAGTAATCTCTTCACCC-TTCAGCAGGCGCT 2806292 Query 123738 CATACAGCATTTTGTTGATTTGCAGGCCGTAGTCAACGTGACGAGCACGGGTGCTCTCTG 123797 ||||| || ||||| | |||| ||||||||| | ||||| | ||| ||| || Sbjct 2806291 GATACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAA 2806232 Query 123798 TGCCACGGTTGTTCTTCATCACGATCAGGTTTTCGAAATCCCAGTGCCACATAGGGTAGA 123857 ||| ||||||||||||| ||| | |||| |||| | ||| |||||||| ||||||| Sbjct 2806231 CGCCGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGA 2806172 Query 123858 AGTAAGTTGCCGAAGCCTTACGTACACCACCCTGAGA-----TGTCCACCCCAGACCTTC 123912 | || || | | | || || || |||||||| | |||| | | || Sbjct 2806171 ACAGGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGG----TC 2806116 Query 123913 TTGGTAAGAACGGA-CGATCGGCA--CAGTTCCTGCGTGTTTCACCTCTCCGCCACGGAT 123969 | | ||| | | || ||| | ||| || | ||| | || ||||| ||||| Sbjct 2806115 T--GGAAGTGCTTATAGAACGGAATGCAG--CCGGTGTGGAATGCTTCACCGCCGCGGAT 2806060 Query 123970 TGGTGCGTCCTGACCACGAATCATGCCAAAGTTAAGGCCGATCCCTGCTCGCTGGGCAGC 124029 || | || | |||| || || ||||| |||||| || || ||||| | | | Sbjct 2806059 CGGGCTGCCCAGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAAC 2806000 Query 124030 GTA-TTTAC-CTTGCGCCGTCAGT-GCGTTGAAGATCTGG--TCGATATCATCGCCGGAC 124084 ||| || || | |||| | || ||||| | ||| || | |||||| || Sbjct 2805999 GTACTTCACAATCGCGCTGGAGGTGGCGTTAA-----TGGAATCAAGGCTGTCGCCGCAC 2805945 Query 124085 TCGATCAATACGCAAGAACTGAACTGTCGTGTCGGAGTACGAACACCCGCCATGATCGGT 124144 || |||| |||||| || |||||||| || ||||| || || || || | ||| || || Sbjct 2805944 TCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGC 2805885 Query 124145 GTCGGCAGAGACACCTT 124161 |||||||| || | ||| Sbjct 2805884 GTCGGCAGCGAAATCTT 2805868 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 148133 TGCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAA 148192 ||| || ||||||||||||||||||||||||| |||||||||| ||||| | |||||| Sbjct 4689758 TGCCGGCTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGAT 4689817 Query 148193 CCCTGCATCCAGCACCAGATCATGCAACG 148221 || | | || ||||| |||| | |||| Sbjct 4689818 TCCGGTAGCCGGCACC--ATCAAGTAACG 4689844 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 148133 TGCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAA 148192 ||| || ||||||||||||||||||||||||| |||||||||| ||||| | |||||| Sbjct 4696909 TGCCGGCTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGAT 4696968 Query 148193 CCCTGCATCCAGCACCAGATCATGCAACG 148221 || | | || ||||| |||| | |||| Sbjct 4696969 TCCGGTAGCCGGCACC--ATCAAGTAACG 4696995 >seq83 Length=912621 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 121692 AGCATATACTGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGATG 121751 ||||||| ||| ||||| | || |||| |||||| || || || || | |||||| Sbjct 582333 AGCATATGCTGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATC 582274 Query 121752 TTGGTATTGCCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCACG 121811 |||| ||| || ||| | | ||||||| |||| ||||| || || |||||||||||| Sbjct 582273 TTGGCATTACCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACG 582214 Query 121812 TAGAAGCGGATAGCTTCGAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 121862 ||||| || || |||||||| || |||| | |||||| ||||| ||| Sbjct 582213 TAGAAACGAATGGCTTCGAGGGCATTGACGCTCATCAGGCAGAGGTAAAGC 582163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485990750020320