Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq122 86.0 6e-12 seq83 86.0 6e-12 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 266/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 31479 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 31538 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 2805877 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 2805936 Query 31539 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 31598 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 2805937 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 2805996 Query 31599 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGC 31658 || || || | || || || ||||| || | | || || |||| | || ||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 31659 CCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAA--AATATCTG 31715 || ||||| |||||| | ||||| ||| |||| ||| |||| | | | | Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAG 2806116 Query 31716 ACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCTA 31774 || | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 2806117 ACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTC 2806173 Query 31775 TATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCT 31834 || ||| || |||||| || | || | |||| |||||||||||||| || | Sbjct 2806174 TA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGT 2806232 Query 31835 TGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 31880 ||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 2806233 TGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 2806278 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 96737 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCGCCGTTCT 96796 |||||||| | || | ||||| ||||| | |||||||| ||||||| |||||||||| Sbjct 2497475 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 2497416 Query 96797 ACCGACTGAACTACA 96811 ||||||||||||||| Sbjct 2497415 ACCGACTGAACTACA 2497401 >seq83 Length=912621 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 96730 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATACGATTTAACAGACCG 96789 || ||| |||||||| | || | ||||| ||||| | |||||||| ||||||| ||| Sbjct 426616 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 426557 Query 96790 CCGTTCTACCGACTGAACTACA 96811 |||||||||||||||||||||| Sbjct 426556 CCGTTCTACCGACTGAACTACA 426535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487705815741600