Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq122 197 1e-45 seq83 192 6e-44 >seq122 Length=4874392 Score = 197 bits (218), Expect = 1e-45 Identities = 296/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 ||||||| | ||| | ||||| ||||| |||| ||||| | |||||| ||||||||| Sbjct 2806288 ACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGC 2806229 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | |||||| ||||| || |||| | |||| ||||||| ||||| ||||| ||| ||| Sbjct 2806228 CGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACA 2806169 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 ||||||||||| || || || || || ||||| ||||| || ||||| |||||||||| Sbjct 2806168 GGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGT 2806109 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 | || |||| ||||| ||| ||||| |||||||| | || ||| Sbjct 2806108 GCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCA 2806049 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || ||||| ||||| ||||| |||||||| || || || | ||||| |||||| |||| Sbjct 2806048 GCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAA 2805989 Query 140008 TCGATGCT-GCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACAC 140066 ||| ||| | | | |||| || | ||| || | |||| || | || || Sbjct 2805988 TCG-CGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAG 2805930 Query 140067 GAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || ||||| || || |||| || || | || | |||||| || || |||| |||| Sbjct 2805929 GAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAA 2805872 >seq83 Length=912621 Score = 192 bits (212), Expect = 6e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 |||| || | ||||||||| || |||||||| | |||||| | ||||| ||||||| | Sbjct 580190 ACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACAC 580131 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | ||| |||||||| || | ||| |||||| |||||||||||| || || || ||| Sbjct 580130 CACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 580071 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 ||||| ||||| || || || || ||||| || || ||||| || || |||||||||| Sbjct 580070 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 580011 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 |||| |||| || || || || || ||||||| || ||| |||| Sbjct 580010 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTA 579951 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || || || || || || ||||| ||||| || || |||| |||| ||| || || | Sbjct 579950 GCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGA 579891 Query 140008 TCGATGCTGCTGAGTCGTTGATACTGT-TAAGCGAATCATCAGACTCGATAACAACACAC 140066 | | | | | |||||||| || ||||| ||| || ||||||||| || || Sbjct 579890 TAGCACTAGAAGTGGCGTTGATAGAGTCTAAGC-TATCGCCACACTCGATAAGCACGCAT 579832 Query 140067 GAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || |||||||| ||| |||| || || | || ||||| || || || || || |||| Sbjct 579831 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAA 579774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535081306542480