Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq122 190 2e-43 seq83 163 3e-35 >seq122 Length=4874392 Score = 190 bits (210), Expect = 2e-43 Identities = 150/180 (83%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| || |||||||| ||||| ||| | |||||||| |||||||| || || ||| Sbjct 3215816 GGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAG 3215757 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || ||||| |||||||| ||||||||||| || || ||||||||||| || || |||||| Sbjct 3215756 CACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAAC 3215697 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 ||| |||| |||||||||||||| ||||| || | |||||||||||||| || || ||| Sbjct 3215696 TCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 3215637 Score = 109 bits (120), Expect = 6e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| ||||| ||||| ||||| || ||||||| ||| || || | | Sbjct 1181487 GGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAA 1181428 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 | |||||||||||||| ||| | ||||| || || || || ||||| || || || ||| Sbjct 1181427 GACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGTTTCAAC 1181368 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAG 108594 || |||||| ||||||||||| || || ||| | |||||||| ||| |||| Sbjct 1181367 TCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 1181315 >seq83 Length=912621 Score = 163 bits (180), Expect = 3e-35 Identities = 317/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 27211 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGG 27270 ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 579742 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 579801 Query 27271 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 27330 | || || || |||||||| ||| || || |||| || || ||| || Sbjct 579802 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 579861 Query 27331 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 27390 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 579862 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 579921 Query 27391 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCG 27450 |||||||| | ||| ||||||| ||| ||| || ||||||| | Sbjct 579922 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 579981 Query 27451 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 27510 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 579982 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 27511 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 27570 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 580101 Query 27571 GAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATATGGA 27630 | | ||||||| ||||||||||| ||||| || | |||||| | || || | || Sbjct 580102 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 580161 Query 27631 CTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAA 27677 ||||| | || || || | || ||| |||| | |||||||| Sbjct 580162 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 580207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541103235063840