Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq122 273 2e-68 seq83 95.1 1e-14 >seq122 Length=4874392 Score = 273 bits (302), Expect = 2e-68 Identities = 683/1018 (67%), Gaps = 56/1018 (6%) Strand=Plus/Minus Query 118289 TTCCTGCGGTGTTACTTGCACGTTCCCGGTATTCAGGTGACTGTTGATCCACGGAATCGG 118348 ||||||||| | || |||||||| ||| ||| |||||||||||| ||||| Sbjct 2808688 TTCCTGCGGAGCAACCTGCACGTTATCGGACACCAGCCACGAGTTGATCCACGGGATCGG 2808629 Query 118349 GTTCTTGGTCGGCTT---ACCGATCAGTTCACCCAGGCCAACCGCTCGCATACGCTGGTC 118405 |||| | ||| || | || ||| || ||| ||||| || |||||| || Sbjct 2808628 GTTCGAG--CGGGTTTTAAACGG-CAGATC---CAGACCAACAGCGTTCATACGGATGTT 2808575 Query 118406 GGTGATGTAGTCGATGTAACCGTC-CAGCATACCTTTGTTCAGGCCGATCATCGAACCGT 118464 ||||||||| || ||||| | | | ||| ||| |||| |||||||| ||||| |||||| Sbjct 2808574 GGTGATGTACTCAATGTA-CTGCCACAGAATATCTTTATTCAGGCCAATCATTGAACCGC 2808516 Query 118465 CTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTGCACCGATGCGTCGATAAAGCCCTGTC 118524 | ||||||| | |||| |||||||||||| | | || | || | || Sbjct 2808515 CGCTGAACAGATATTCCGCCCACTCTTTCTCCTGCTCGGCAGCCAGCACGAA--CAGATC 2808458 Query 118525 GT-GC-CTCTTCGTAGCAATCTTCTGCCA-CACGTGCAAA--CAGGTCACCTTCGTTACC 118579 || || ||||| ||| |||| || | | || || | | || |||| || Sbjct 2808457 GTAGCACTCTTGACGGCACTCTTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCACT 2808398 Query 118580 GTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAAATGCAAGGCTTCATCACGAGC 118639 | | ||| | ||||||||| |||||| |||| || |||| |||||||| || || Sbjct 2808397 GCGCAGCAGGT---TCAGCATATGCTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGC 2808341 Query 118640 AATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCCGCGCTCACCGAAAGCGAAGGA 118699 ||||| | ||| || |||| || || ||| | ||||||| | || ||||| || Sbjct 2808340 GATCAGCTTAATGATTTTGGCATTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGA 2808281 Query 118700 GCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAGTGCATTGATGTTGTGCAGACACAG 118759 |||||||||||| ||||| || |||||||||||||| || |||| | | ||| || | Sbjct 2808280 GCAGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGCGCGTTGACGCTCATCAGGCAGAT 2808221 Query 118760 ATA------------CAGCGCACG-AGCGTGTTTGT-ACGGGTCAACCGGAA----GGTT 118801 ||| |||||| || || || || |||| | || | | ||| Sbjct 2808220 ATAGAGCTGCTTTTTCAGCGCGCGCAGGCTGACGGTCACGGTTTTGCCCGCAACCTGGTG 2808161 Query 118802 CAGGGCCTTG---CGGCAGTT--CAGT--TCGTACAGGTC-ATCATA-CATCTTCGTCAC 118852 | | ||||| | |||| | |||| | | || || |||| | | || | || | Sbjct 2808160 C-GTGCCTTCACCCAGCAGATGCCAGTAGTTGGTCATTTCGATCAGATCGTCGTAGTAGC 2808102 Query 118853 CG-------CCTCGGCGCGGGCGATAATCTCCGGCGACTTCATGATGTCATCAAAGACGA 118905 | | | |||||| | | |||| | | | ||| || |||||||| | Sbjct 2808101 CAGAGATATCTTTGGCGCGTGACAGGATCTGCTCGTTGGTGACGATATCGTCAAAGACCA 2808042 Query 118906 TCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGAGCGAGAGTGGATAGTCT 118965 || ||| || | ||| ||||| || ||||||||||| || || ||||||||||||| Sbjct 2808041 GCGCCGGGTCGTTAACGATATTACGAATAATATGGGTGTACGAACGCGAGTGGATAGTCT 2807982 Query 118966 CACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTCGGACACGATCGGGAGCA 119025 | ||||||||| || || | ||| |||||||| | | || | | ||| |||| Sbjct 2807981 CGGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCCGGGATCGAGATCAGCGGCAGCA 2807922 Query 119026 GAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGATCTGGTACTTCAGGTTGC 119085 | ||||||| | || ||||| | ||| ||||| || |||| ||||||||||||| Sbjct 2807921 ACGCCACGTTCGGGCTGCGTCCCTGAATAGAGTCCAGCAGAGTCTGATACTTCAGGTTGC 2807862 Query 119086 TGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTCGATACGGTCACGGGTCA 119145 |||| |||||||| || ||||| || ||||| | ||||| ||||| || || | | Sbjct 2807861 TGATAAAGATGTGTTTTTCGTGCTCTGGCAGCGCCTGATAGTCAATACGATCGCGCGAGA 2807802 Query 119146 CGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTCGATCAGCTTCTCGAACT 119205 ||| ||||||||||| ||||||||||| | || ||||| ||||||||||| || || Sbjct 2807801 CGTCCACTTCTTCCGGGCGCCAGAAGAAAGAGAGCTGCTTTTCGATCAGCTTTTCAAAGA 2807742 Query 119206 TGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTCGCCGAGGAACATCGG 119263 || | | |||||||||||| | || | ||||| | || |||| ||||||||| Sbjct 2807741 TGTCATATTTCTGCTGGTCGAAACGCGCCACGTTTACCGGCTGTCCGAAGAACATCGG 2807684 Score = 178 bits (196), Expect = 1e-39 Identities = 472/711 (66%), Gaps = 35/711 (5%) Strand=Plus/Minus Query 119928 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 119987 || ||||| |||| |||||| |||| ||| | ||||| || ||||| | |||||| Sbjct 2807174 CGCGGTGGTTCAATACCGTTGGTGGCGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATC 2807115 Query 119988 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAAT----AGCGATGTCGATACGCAGCTT 120043 | | || ||||||||||| ||||| || || | | |||| || ||||||| Sbjct 2807114 AGGGCAGAGAGCGTAGAGTTGCGCAGGCCGTGGGTTTTCACCGAT-TC---ACGCAGCGC 2807059 Query 120044 TTCCCAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTC 120103 |||||| |||| | ||| || | || |||| | || ||||| || ||| Sbjct 2807058 TTCCCAGTCCAGCAGCAGCGGCGTATCACAGATCGCATCCAGGTCCTTCTTATAGGTGTC 2806999 Query 120104 GATCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAAGAGATCACATTTACCCAATTC 120163 |||||||| ||| ||||| | || ||||| |||| || || |||| ||| Sbjct 2806998 GATCGGCATAATACCCTGCGCATAGGTGGTTTCGTTAAACCACGGGCAGGCACCCTGTTC 2806939 Query 120164 TTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAG----CCAGTT 120219 | ||||| || || |||| ||| | | ||||| | |||||| | || Sbjct 2806938 GATAGCCAGATCGTTAGAGGCTTTCAGCAACCAGTACTGAATGGCTTCAAAGGTCTGGTG 2806879 Query 120220 CGTGAACAGCGTT--CGCTGCACGAGGGTCGCTGTATTTCAGGCCACGCTTCGCCAGGTA 120277 ||| | | | || |||||| |||| ||| || ||| |||||||||||| Sbjct 2806878 CGTCAGGA-CATTAGCGCTGCC-----GTCGGAGTAACGCACGCCGTTCTTCGCCAGGTA 2806825 Query 120278 GTATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCG--CAGTTTAGTCTT-CTCTGC 120334 ||| || ||||| || |||||||||||||||||| || | || | | || || Sbjct 2806824 GTAAGCGTAGTTGATCACGCCAATACCCAGAGTACGGCGACCCATTGCGCCACGCTGCGC 2806765 Query 120335 CGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACC---AGTGT 120391 ||| | | || |||| ||| || || | ||| ||||| ||||| ||| || || Sbjct 2806764 GGCCGGGATTGGGTAGTCCTGGTAGTCCAGCAGGGCATCCAGCGCACGCACCGCCAGGGT 2806705 Query 120392 ACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAG 120451 | ||| ||| ||| ||| ||||| |||| | | ||||||||| | || ||||| Sbjct 2806704 T--GCCAG-CTCCTGCAGGTCGTCCAGGCTCTCAATCGCGCCGAGGTTAAACGCCGACAG 2806648 Query 120452 AGTACACAGGGCCACTTCCCCCGGGTCGTTCGGGTCATTAATGTCCGTAATCGGATGTGT 120511 ||||| || || | ||| || |||| | |||| ||| | ||| | || Sbjct 2806647 CGTACAGAGCGCGATTTCGCCATTTTCGT------CGTTAACATCCAGCAGCGGTTTGGT 2806594 Query 120512 CGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAA 120571 |||||| ||||| |||| ||||||||| ||||| ||| || || | | ||||| || Sbjct 2806593 CGGCAGTGCGATCTCCAGGCACAGGTTAGACTGGCGCACTGGCGCGATTGCCGGGTCAAA 2806534 Query 120572 CGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT 120622 ||||| | ||||||||||||||||||| ||| | ||| |||||||| || Sbjct 2806533 TGGGCTGTGGGTGTTGCAGTGGTCAACGTTCTGAATGTAGATACGGCCGGT 2806483 Score = 104 bits (114), Expect = 2e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 141634 AGCAGAAAGGCTCTGTTGAACTGCTGTACGATGTGTTCGGCGGCGACCTGAACTCCAAAG 141693 |||||||||| || || ||| |||||| || | ||||||||| | || ||| | Sbjct 3983566 AGCAGAAAGGGTCGGTCGAAGTGCTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGG 3983507 Query 141694 GCTATCGCACCTTGGATACTCACGTCGGCCTGATTTACGGTGACTCCATCACCGTGGCTC 141753 |||| |||| | ||||| || ||||| ||||| ||||| || ||| | | | Sbjct 3983506 GCTACAAGGTGCTGGACCCGCACGTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGC 3983447 Query 141754 GCGCCAAAGAGATCTTCGAG-CGCCTGGAAGCAAAAGGCTTTGCATCGAACAACGTTGTG 141812 | ||||| ||||| | ||| || ||||| || ||||||||||| | ||| || ||| Sbjct 3983446 GTGCCAATCAGATCCT-GAGTCGTCTGGAGGCCAAAGGCTTTGCCAGCAGCAATGTGGTG 3983388 Query 141813 TTCGGTGTCGGTTCCTTCACCACCCAGTTCAACACTCGTGACTCTCTTGGTCAAGCAGTG 141872 ||||| ||||| || | || ||||| |||||| |||||| | ||||| || || Sbjct 3983387 TTCGGCGTCGGGTCTTATACGTACCAGTACAACACGCGTGACACCTTTGGTTTCGCCATG 3983328 Query 141873 AAGGCTACG 141881 || || ||| Sbjct 3983327 AAAGCGACG 3983319 Score = 82.4 bits (90), Expect = 7e-11 Identities = 201/302 (67%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 111908 TCCTTTGCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACA 111967 |||| || || || || ||||||| || || ||||||| ||||| ||| | || || Sbjct 3700808 TCCTGGGCAATGGCGTTGATGGTCAGATCGCGTCGGGCCAGATCCTGTTCCAGCGTGACG 3700749 Query 111968 TCTGG-GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACG 112026 || || || | | | || |||| || || || ||| | ||||||||| || Sbjct 3700748 TCGGGCGCGGCATAGCAGA-CGAAGCCGGTATAACCGCTGCCGGACTTACGCTCGGTGCG 3700690 Query 112027 GGCCAGGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGAC 112086 ||||| || |||||||| | | | ||| ||||| | || ||||| || || || Sbjct 3700689 CGCCAGCGCATACTCTTCGTGGCTGGAAGGGTGCAGAAATACCGGGAAATCGCGGCCAAC 3700630 Query 112087 TTGCTCGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACG 112146 |||||| |||| ||| ||||| | | | | || || ||||| || |||| Sbjct 3700629 CTGCTCGTAGCCAGCATCCAGCATCTGCTGGGGAGAGGCTCCCACCACCACCCAGTCTTT 3700570 Query 112147 GTCTTTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTT 112206 |||||| | | | || |||| ||||||| || ||||||||||| || || |||| Sbjct 3700569 GTCTTTCAGCGGCAAATTCAGCAGTCCATCGCGCACGGCGCCGCCGACAAGGTATGTTTT 3700510 Query 112207 CA 112208 || Sbjct 3700509 CA 3700508 >seq83 Length=912621 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 120431 GCCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCGGGTCATT 120490 ||| | ||||| ||| || || ||||| || || | || || | |||| || || Sbjct 580570 GCCCAAGTTGAAGGCTGATAGCGTACAGAGAGCGATCTCACCA----CTTTCG--TCGTT 580517 Query 120491 AATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCAC 120550 ||| || | | ||| | |||||||| |||||||| | || ||||| ||||| || Sbjct 580516 AATATCGTTTAACGGTTTAGTCGGCAGCGCGATTTCTAAACAAAGGTTTGACTGGCGTAC 580457 Query 120551 CGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTA 120610 |||||| | || || |||||||||| ||| || ||||||||||||| || | || Sbjct 580456 AGGGGCCACCGCCGGATCAAACGGGCTATGAGTATTACAGTGGTCAACGTTTTGGATATA 580397 Query 120611 AATACGGCCTGTCTGAGAACGCTCCTG 120637 ||||||||| ||| || ||| || || Sbjct 580396 AATACGGCCAGTCGAAGCACGTTCTTG 580370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 260/393 (66%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 118378 CCAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATAC 118437 |||| || || || ||||||| | ||| || || |||||||| | || ||| Sbjct 582551 CCAGTCCCACGGCATGCATACGAATATTGGTAATATATTCGATGTATTGGCAGAGAATAT 582492 Query 118438 CTTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCC 118496 |||| |||| ||||||||||| || || ||||||| | |||||| | ||||| ||| Sbjct 582491 CTTTATTCATTCCGATCATCGAGCCATCACGGAACAGGTATTCTGCCC-ACTCTTTTTCC 582433 Query 118497 TGCACCGATGCGTCGATAAAGCCCTGTCGTGCCTCTTCGTAGCAATCTTCTGCCA-CACG 118555 ||| | | || | | || || ||||| | ||| || | || | | | Sbjct 582432 TGCTCAGCAGCCTTTTTGAATAGCTCAAAGCACTCTTGCTCGCACTCAGCAGCAATCTCT 582373 Query 118556 TGCAAA--CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCG 118613 | || | | ||| |||| |||| | ||| || ||||||| ||| ||||| Sbjct 582372 TTCATTTCCGGATCATCTTC---ACCGCTTCGCAGCAGATTTAGCATATGCTGTGTTCCC 582316 Query 118614 GACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATT 118673 | || |||| |||||| || || || || || || || |||| ||||| ||| Sbjct 582315 GTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTACCTTCCATC 582256 Query 118674 ACGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCC 118733 | | ||||| |||| ||||| || || || ||||||||||||||||| || ||||| Sbjct 582255 AGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACGAATGGCTTCG 582196 Query 118734 AGTGCATTGATGTTGTGCAGACACAGATACAGC 118766 || ||||||| | | ||| || || || ||| Sbjct 582195 AGGGCATTGACGCTCATCAGGCAGAGGTAAAGC 582163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477153041956560