Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq1959 111 5e-20 seq302 84.2 7e-12 >seq1959 Length=43063 Score = 111 bits (122), Expect = 5e-20 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 40969 CACAACAAGTTCATGGCCTTCGTCGGAGGCTACCGCAGCGGCAAGACCTTCGTTGGCTGT 41028 ||||| ||||||| |||||||| ||||||||||| ||||||||||| |||||||| || Sbjct 2419 CACAAGAAGTTCAACGCCTTCGTTGGAGGCTACCGTAGCGGCAAGACATTCGTTGGTTGC 2478 Query 41029 GTGCGGATGTGCATCAACGCGCTGGAGTTCCCCGGCATACCTCAGGGCTACTTCGCTCCG 41088 || || |||| || || || ||| ||| || ||| | ||| ||||| || ||| Sbjct 2479 GTTCGACTGTGGATGCTGGCAATGCAGTACCCGGGTATAAAGCTGGGATACTTTGCACCG 2538 Query 41089 ACCTACCCGCAGATCACTGACATCTTCTA 41117 |||||||| |||| | || |||||||| Sbjct 2539 ACCTACCCCATGATCTCGGATATCTTCTA 2567 >seq302 Length=239003 Score = 84.2 bits (92), Expect = 7e-12 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 37498 GACGCCGCGCTGCCTTGCGTCAGTTGTGGTCGGCACCACCAGGGCAAGTACGACGCCGGG 37557 ||||| | || ||| || | || |||||||| || || |||| ||||| ||||| ||| Sbjct 152779 GACGCAGAGCAGCCCTGTATTAGCTGTGGTCGTCATCATGAGGGTAAGTATGACGCAGGG 152838 Query 37558 CATTACCGGACAGTGGGGAGCAACCCC-GCGCTGCGCTTCGA-GCCGCTGAACTGCCACA 37615 ||||| || || | | ||||| | || ||| |||| || | || |||||||| | Sbjct 152839 CATTATCGAAC-GCGTGGAGCCTCGCCAGCGACTCGCTATGACGAAACT-AACTGCCATA 152896 Query 37616 AGCAATGCGTTCCGTGCAATCAGCACAAGTCCGGAAA 37652 ||||||||||||| || ||||||||| || ||||| Sbjct 152897 AGCAATGCGTTCCCTGTAATCAGCACTTATCAGGAAA 152933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163354249930312