Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq43 145 1e-29 seq3962 125 1e-23 seq275 96.9 7e-15 >seq43 Length=2082672 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||||| || | || | ||| || || ||||| ||||| || ||||| Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || || || ||||||||||| | | || |||||||| || Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| || || || ||||| || ||||| | |||| ||||| ||| Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACT 901121 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || |||||||| || | ||||| ||||| ||||||||| Sbjct 901120 TCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || || || ||||| ||||| ||||| || ||||| Sbjct 901072 CCACCACGCAGACGGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGAC 901013 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| || || || || |||||||| | ||| || || ||||| || Sbjct 901012 AAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 900953 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| || ||||| || || || || || || | ||| || || || Sbjct 900952 ATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACC 900893 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||||||||||| ||||| || || |||||||| Sbjct 900892 TCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq3962 Length=6517 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || || || ||||||||||| || || || |||| Sbjct 415 TACCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 356 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||| || ||||| || || || ||||| |||| || |||||||| | Sbjct 355 ACAAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGG 296 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || || || ||||| || || || || || || | ||| || || | Sbjct 295 GGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAA 236 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || ||||||||||| | ||||| || || |||||||| Sbjct 235 CCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || ||||| ||||| || ||| || || || || || || |||||||||| Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | || || ||||| || || || ||||| || || || || || || ||||| | Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCT 6169 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| | ||| || || || || | || || |||||||| || | ||||| |||| Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 82801 ATATCTGCATT 82811 | ||||||||| Sbjct 6108 AAATCTGCATT 6098 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || || |||||||||||||| || || || |||| Sbjct 187 TACCACCACGCAGACGGAGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAG 128 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || ||||| || || || ||||| ||||| || |||||||| | Sbjct 127 ACAAGGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGG 68 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 | || || ||||| || || ||||| || || ||||| ||||| Sbjct 67 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAAT 25 >seq275 Length=398669 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || || || || || | | || || || || || ||||||||||| | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | || || ||||| || ||||||||||| || ||||| || ||||| || || | Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| | || ||||| || || || || || || || || || | || || |||| Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 82801 ATATCTGCATT 82811 | ||||||||| Sbjct 170545 AGATCTGCATT 170535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981748413583157