Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3962 120 3e-22 seq93 107 2e-18 seq19 107 2e-18 seq275 104 2e-17 seq43 96.9 3e-15 seq146 89.7 5e-13 >seq3962 Length=6517 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| |||||||| || ||||| || || ||| ||||||||| || Sbjct 390 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCCTCGAGTTG 331 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || || |||||||| || || |||||||| || ||||| |||||| Sbjct 330 CTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTGGATCTT 271 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | | || | |||||| || || | |||| ||| ||||| || Sbjct 270 AGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGT 211 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 210 AAGGGTCTTGACGAAAATCTGCAT 187 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || ||||||||||| || || ||||| |||||| Sbjct 6253 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 6194 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | ||||| | ||| | |||||| || || | |||| | Sbjct 6193 TCCTGGATTTTGGCCTTCACATTCTCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATG 6134 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| ||||| || || ||||||||||| Sbjct 6133 GTCTTGCCGGTAAGAGTCTTGACAAAAATCTGCAT 6099 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 133551 GGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCC 133610 |||||||| |||||||| |||||| ||| | | ||||| | ||| | |||||| Sbjct 6517 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGAGTCTGAGGGCTCA 6458 Query 133611 ACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || | ||||| ||| |||||||| || || || |||||||||||||| Sbjct 6457 ACCTCCAGGGTGATGGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 6408 >seq93 Length=974399 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 |||| || || || |||| ||| ||||| || || || || ||||| | ||| || ||| Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| ||||| |||||||| || || ||||| | |||||||| ||||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGG 120844 | | | ||||| || ||||| || | || | ||||||||||||||||| |||| Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 120845 CCTTTTT 120851 |||| || Sbjct 914807 CCTTCTT 914813 >seq19 Length=2947477 Score = 107 bits (118), Expect = 2e-18 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||||||| |||||||| || || || || | | || || ||||||||||| ||| Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTG--CCA-TCTTCAAGCTGCTTGCCAGCGA 340615 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| ||||||||||| || ||||| ||||||||||| ||||| ||| | | Sbjct 340616 AGATGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACAT 340675 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||||| | || | |||||| || || | |||| ||| ||||| || || || || | Sbjct 340676 TCTCAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGA 340735 Query 133648 CGAAAATCTGCATG 133661 |||| ||||||||| Sbjct 340736 CGAAGATCTGCATG 340749 >seq275 Length=398669 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || |||| || ||||||||||| || ||||| ||||||||| Sbjct 170690 TCCTCAAGCTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTG 170631 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | ||||| | ||| | ||| || || || | ||||| Sbjct 170630 TC-CTGAATTTTGGCTTTGACGTTCTCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGAT 170572 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| || || |||||||| Sbjct 170571 AGTTTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 170536 >seq43 Length=2082672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| |||||||| ||||| |||||||| || || ||| ||| | || || |||| Sbjct 901277 ATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCA-TCTTCAAGCT 901219 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | |||||||| || || ||||||||||| ||||| ||| | Sbjct 901218 GCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATTT 901159 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| | || | ||| || || || | || | ||| ||||| | Sbjct 901158 TGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAATGGTCTTGCCAG 901099 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 901098 TGAGTGTCTTGACAAAGATCTGCAT 901074 >seq146 Length=666858 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 19930 GCCGCACGAATTGACGCCGCGGCGCACGCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCC 19989 ||||||| ||| | |||||| | |||||||||||| ||||||| ||||| ||| Sbjct 487600 GCCGCACAGGTTGTTGGCGCGGCTGATGCGCACGTAGCCGCCCTCGCCCCAGTCGCGGCC 487541 Query 19990 CCACGAGTTTTTGATCGTCCAGTACGGCACGTTGTTC---TCGACGCCGTAGCCCACGAG 20046 ||||||||| | ||||||||||||| || | | || ||||||||||||| || Sbjct 487540 CCACGAGTTGCGCACCGTCCAGTACGGCCCGCCCTGCGGGTCCTCGCCGTAGCCCACCAG 487481 Query 20047 CAGCACCGCGTGG 20059 || ||| |||||| Sbjct 487480 CACCACGGCGTGG 487468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483382954194120