Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq122 181 1e-40 seq83 181 1e-40 >seq122 Length=4874392 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337 ||| || || |||||||||||||| | || ||||| ||||| ||||| || |||| ||| Sbjct 3215637 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 3215696 Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397 |||||| || || ||||| ||||| || || |||||||||||||||||||| ||||| || Sbjct 3215697 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 3215756 Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457 ||| || || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || Sbjct 3215757 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 3215816 Query 61458 TTC 61460 || Sbjct 3215817 CTC 3215819 Score = 116 bits (128), Expect = 4e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 61285 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAG 61344 |||| ||| |||||||| | ||| || || |||| ||||| |||||| ||||| || Sbjct 1181315 CTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAA 1181374 Query 61345 CGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 61404 || || ||||| || || || || ||||| | |||||||||||||||||| | | | Sbjct 1181375 CGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATC 1181434 Query 61405 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 || || ||| ||||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 1181435 GCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 1181493 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 |||||||||||||| || | ||||| | || || || ||| || ||||| || | Sbjct 2806265 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 2806206 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 ||| | || ||||| | |||||||| || || || || || ||||||||||| | Sbjct 2806205 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 2806146 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || || ||||| || || || || || || ||||| || || |||| ||||| || | Sbjct 2806145 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT-GCAGCC 2806087 Query 142083 GTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATGCCAACGT 142140 | ||| ||| ||||||| | |||| || ||||| | || ||| Sbjct 2806086 G-GTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 2806028 Query 142141 TGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCT-GAAGTTTTGTTA 142199 | || |||||||| || || | ||||| || | | ||| | ||| || || |||| Sbjct 2806027 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGCGTTA 2805969 Query 142200 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTCGGA 142259 || || | | || ||| ||||| | ||| || ||||||||| ||||| Sbjct 2805968 ATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 2805909 Query 142260 GTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAA-CTTGATGAGTAGAAACGGCATC 142318 || || | || | ||||||||| || |||| |||| ||| | | || || | ||||| Sbjct 2805908 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAG-GTGGAGATCGCATC 2805850 Query 142319 ATAAAAACG 142327 || ||||| Sbjct 2805849 GTAGAAACG 2805841 >seq83 Length=912621 Score = 181 bits (200), Expect = 1e-40 Identities = 321/467 (69%), Gaps = 1/467 (0%) Strand=Plus/Minus Query 141862 TTTTACCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAA 141921 |||||||| | |||| ||| || | || || || | ||||| || | || || | Sbjct 580207 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 580149 Query 141922 TACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGT 141981 |||||| | || ||||| |||||||||||| ||||||| | | || | ||| |||| Sbjct 580148 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 580089 Query 141982 GCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATT 142041 ||||||| || ||| || ||| || ||||| ||||| | || ||||| || ||||||| Sbjct 580088 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 580029 Query 142042 TTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCA 142101 | || || || ||||| ||||| |||| || ||| ||| ||||| | ||||||| Sbjct 580028 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 579969 Query 142102 TACCGATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTT 142161 || ||| ||| ||||||| |||| | ||||||||||| || || |||| Sbjct 579968 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 579909 Query 142162 TAGAAATATATTCGATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142221 |||| |||| | || | ||||| ||| ||||| | ||| ||| || Sbjct 579908 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCAC 579849 Query 142222 CTTCAATAACTACACAACTAGAGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTG 142281 || |||| || || ||| ||||||||||| || || | || ||||| |||| Sbjct 579848 ACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTG 579789 Query 142282 GAGTAGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGA 142328 | ||||| || |||| || | || || |||||||||||||| ||| Sbjct 579788 GCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535247693515440