Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq122 527 2e-145 >seq122 Length=4874392 Score = 527 bits (584), Expect = 2e-145 Identities = 755/1050 (72%), Gaps = 25/1050 (2%) Strand=Plus/Plus Query 24457 GCCACC---TTCCCGCTCGACACCCCCGTCCTGCTGACCAACCCGCAGGCCTACATCGGC 24513 |||||| ||||||||| |||| || || ||| | ||| || |||||| | || Sbjct 199892 GCCACCGTATTCCCGCTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGG 199951 Query 24514 AAGGCCGGCAACAAAGGCACGCTCGCCCGCACGCTCGATGCCATCACCGACCAGACCAAC 24573 || ||||| || |||||||| || |||| | || || ||||||||| ||| Sbjct 199952 AAAGCCGGTGTCAGCGGCACGCTGGCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAG 200011 Query 24574 CCGCTCACGGTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGCCGAGACCACGTCCAAC 24633 ||| | ||||| ||||||||||| | | |||| ||| || | ||||| ||| Sbjct 200012 CCGGTAACGGTGGTGGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAAT 200071 Query 24634 CTGATCGGCGCCACCAACGCGGCCGGCCGGTACACCGGCATGAAGGCGTTGCTGGCCGCC 24693 | ||||||| || | | || |||||| |||||||| ||||| ||| |||| || || Sbjct 200072 ATCATCGGCGGCAGCGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGC- 200130 Query 24694 CGCA-ACCGTT-TTGGCGTCGCGCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGC 24751 ||| |||| ||||||| |||||| || || | ||||||||||| || ||| Sbjct 200131 -GCAGACCGACCTTGGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGG 200189 Query 24752 CAGTCGGGACCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGG 24811 ||| | |||| ||||| | ||| ||| ||||||||||||||| ||| | |||| Sbjct 200190 AAGTGGCCACCGCGCTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGG 200249 Query 24812 CGTACGGCTGCCAGAC--TAAGGAAGAGGCCGTCGCCTATCGCAGTAACTTCGGCCAGCG 24869 | |||||||| | || |||| || || || |||||| |||||| ||||||| Sbjct 200250 CTTACGGCTGTAAAACGGTAAGC--GATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCG 200307 Query 24870 CGAAGCGATGGTGATGTGGCCGGATTTCGTCGGCTGGGACACCGCCGCCAACGCCGAGAC 24929 ||| ||||||||| ||||| || || |||| |||| |||||| ||| ||| | | Sbjct 200308 CGAGCTGATGGTGATCTGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGA 200367 Query 24930 CACGCTGTGGGCCACGGCCCGCGCGGTTGGCTTGCGCGCCAAGATCGACAACGACACCGG 24989 || | ||||| |||||||| | ||| |||||||||| ||||| ||||||| ||| Sbjct 200368 AACTGCCTATGCCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAGCGG 200427 Query 24990 CTGGCACAAGACGCTTTCCAACGTGGCTGTGGGTGGCGTGACTGGCCTGTCGCGCGACGT 25049 |||||| || || || || ||||| | || |||||||| ||| | || ||| || Sbjct 200428 CTGGCATAAAACCCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTC-CGCCTCGG 200486 Query 25050 T-TTCTGGGACCTCCAGGACCCGGCGACCGACGCGG----GCTACCTGAACGCCAACGAG 25104 | ||||||||||| ||| | || |||||| || | ||| |||| |||| || Sbjct 200487 TATTCTGGGACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAA-GCCAGCG-- 200543 Query 25105 GTGACCACGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGCGCG 25164 | ||||||||| | | | ||||| | ||||||||||||| ||||| || |||| Sbjct 200544 -TCACCACGCTGATCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGAT 200602 Query 25165 GATCCGCTGTTCGCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACCATG 25224 || |||||||||||||| || |||||||||||| | || |||||| | |||||||||||| Sbjct 200603 GACCCGCTGTTCGCCTTTGAAAACTACACCCGCTCGGCGCAGGTGATCGCCGACACCATG 200662 Query 25225 GCGGAAGCCCACATGTGGGCAAACGATCTGCCGATGACGCCGACGCTGGTCCGCGATCTG 25284 || || || || |||||||| ||||| |||| |||||||||||||||| ||||| | Sbjct 200663 GCCGATGCGCATATGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATT 200722 Query 25285 CTGGAGGGCATCAACGCCAAGCTGCGCATGCTGACCCGCAACGGCTACCTGCTGGGCGGC 25344 | | || |||||||||||| | || ||||| | | ||| || |||||||||| | Sbjct 200723 ATCGCCGGGATCAACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCC 200782 Query 25345 GCCGCGTGGTTCGACCCGGAA--GCCAACACCAAGGACACGCTGAAGGCCGGCCAGCTCG 25402 | |||| ||| || || ||||||| | |||| | ||||| |||||| |||| Sbjct 200783 AACTGCTGGTACGA--CGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGT 200840 Query 25403 CCATCGACTACGACTACACGCCCGTCCCGCCGCTGGAAGACCTCACGTTCCGCCAGCGCA 25462 |||||||||||||| || || || |||||||||||||| || || | || ||||||| Sbjct 200841 ATATCGACTACGACTATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCA 200900 Query 25463 TCACCGACCGCTACCTGATGCAGTTCGCCG 25492 | |||||| |||||||| | | ||||||| Sbjct 200901 TTACCGACAGCTACCTGGCGAACTTCGCCG 200930 Score = 215 bits (238), Expect = 1e-51 Identities = 816/1257 (65%), Gaps = 69/1257 (5%) Strand=Plus/Plus Query 19927 TATCCCGCCGACCAGCGGGACGCCGT-GCGCGCCACGCTGGAGCTGGAATCCGAGCCGAT 19985 ||||||||||| ||| ||| || | || ||| || | |||| || |||||||| Sbjct 196991 TATCCCGCCGATAAGCAGGAGGCGATAGCCCGC-ACCTTAACCCTGGCGTCGGAGCCGAT 197049 Query 19986 CACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGA 20045 | |||||| || |||||||||||||||||||| || | |||||||||| | ||||| Sbjct 197050 CGTCAAGCTGCTGGAGGAGAACGCCTACCGCGAGGTGATCCTGCGCCAGCGCATTAACGA 197109 Query 20046 CGCGGCGCGCGGGGTCATGCTGGCCTTCGCCGAAGGGGAAG--ACCTGGAGCAGATCGCG 20103 |||||| | |||| |||| |||||| || || || | || || ||| | | | Sbjct 197110 AGCGGCGAAAGCCACCATGGTGGCATTCGCC--AGCGGCAGCGATCTCGACCAGCTTGGG 197167 Query 20104 GCGAACTTCAACGTGCAGCGCTTGACCATCACGCCGGCTGACGACACCACCGTGCCGCCG 20163 | ||| | ||| || || | | || || || ||| ||| |||||||| Sbjct 197168 GTCAACAACGGCGTCACCCGTCTGGTGCTGAAACCCGCAGATAACAGCACGCTGCCGCCG 197227 Query 20164 ACGCCCGCCGTGATGGAGGGCGACGACTCGCTGCGCGAGCGC---GCACAGGAAGCGTTT 20220 || || || | | ||| |||||||| | || |||| || |||| | ||| Sbjct 197228 ACCCCGGCGCGGCTTGAGAGCGACGACGACTTCCGTCTGCGCATCGCCCAGG---CCTTT 197284 Query 20221 GAAGGGCTGTCCGTGGCCGGCCCGACCAAGGCCTACGAGCAGTTCGCGCGCTCGGCTGAC 20280 || |||||| |||||| || ||| | |||||| || | ||| ||| || || Sbjct 197285 GAGGGGCTGAGCGTGGCGGGGCCGGGCGGGGCCTATGAATATCACGCCCGCAGCGCCGAT 197344 Query 20281 GGCCGGGTGGCGGACGCGCGCGCGATCAGCCCGGCCGGCGCGGAAGTGGTGG---TCTCG 20337 || || |||||||| | ||| ||||||||| || ||| ||||| || | Sbjct 197345 GGTCGCGTGGCGGATGTCACCGCCATCAGCCCGTCCC---CGGCCGTGGTCACCATCACC 197401 Query 20338 GTGCTGTCGCACCTGAACGACGGCACGGC-AGACGAGAGC----CTGCTGGCGACTGTAC 20392 |||||||||| |||| | || |||| || | || || |||||||| || Sbjct 197402 GTGCTGTCGCG--TGAAGGGCG---CGGCGAGGCCAGCGCTGAACTGCTGGCCGTCGTCA 197456 Query 20393 GCACCGCGTTGAGCGATGACGATACCCGGCCGCTCGGCGACCGTCTGACGGTGCAATCCG 20452 | | ||| ||| || || || || ||| | | || || | | ||||| || | Sbjct 197457 ACGCGGCGCTGAATGACGAGGAGGTGCGCCCGGTGGCGGATCGCGTCAGCGTGCAGTCGG 197516 Query 20453 CCACCATCGTCCCGTACCGCATCCGTGCCACGCTGTACCTGGCATCGGGGCCGGCGGCCG 20512 | | |||||| ||||||| | |||||||||| || | ||||||| ||| | Sbjct 197517 CAAAAATCGTCGAGTACCGCGTTGAGGCCACGCTGTTTCTCTATCCCGGGCCGGAGGCGG 197576 Query 20513 AGCCGATCCTGGACGCGGCTGGCAAGCGGGCTGACA--CTT----ACCGCACCACGCGCC 20566 ||||||||| | ||| | |||| | ||||| | ||| | ||| ||| ||| Sbjct 197577 AGCCGATCCGCGCCGCCTC-GGCAGCCCGGCTGGCGGCCTTTGTAAACGC-CCAGTCGC- 197633 Query 20567 GGCGCATCGGCCGCGACATCAACCGCTCGGCGATCACGGCGGCACTACATGTGGAGGGCG 20626 ||| | || ||||| ||| | | || ||| | ||||| || || || ||||| | Sbjct 197634 GGC---TGGGGCGCGATATCCGCAGGTCAGCGCTGTATGCGGCGCTGCACGTCGAGGGTG 197690 Query 20627 TGGA------AAAGCTGGTGCTGCATGAACCGGCCGAAGACATCGCGCTCGATCTGACAC 20680 | | | |||||| || || || | || || | | | ||| ||| || | Sbjct 197691 TCCAGCGCGTAGAGCTGGCGCAGCCTG---CTGCTGATG---TGGTGCTGGATAAAACCC 197744 Query 20681 AGGCGGGCTACTGCACCGGCGTGGATATCGTCAACGGGGGCACCAGTGAGT-AGCGCAAC 20739 |||||| |||||||||| | | |||| || || || ||||| | ||| Sbjct 197745 AGGCGGCGTACTGCACCGCTACGCAGATCGCGGTAGGAGGTTCCGATGAGTGACCGC--- 197801 Query 20740 CCTGTTgcc-gccgaacgcgacgccgctggagcgccgcgccgcgcagacgggcgcacgca 20798 ||| |||| | || | || | | ||| ||| |||||| | | | || ||| Sbjct 197802 -CTGCTGCCCGTCGG-CTCGTCACAGCTCGAGGTGGCCGCCGCCGAAGCCTGTGCGCGCC 197859 Query 20799 tcgaacgcgTGCCGGTGCCGCTGCGCGACCTGTGGAACCCAGCCACCTGTCCG--GCCGA 20856 | | | ||||||||||||||||| |||||||||||| || || ||| ||| Sbjct 197860 TGCAGCAGCTGCCGGTGCCGCTGCGCACCCTGTGGAACCCGCAGACTTGCCCGCTGCC-- 197917 Query 20857 GCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGGAACCCTTCCTGGCCGCT 20916 |||| | |||| || |||||| | | || ||||| |||||| | | |||||| Sbjct 197918 GCTGCTCCCCTATCTCGCCTGGGCCTGGTCGGTGGATCGCTGGGATCAGGAGTGGCCGGA 197977 Query 20917 CGCCACCAAGCGCGCCGTGACGGCCGCCTCCTACTTCGTGCACCGCAAGAAGGGCACGAT 20976 | |||| ||| || ||| |||||||| | || | |||||| |||||||| || Sbjct 197978 AGAGACCAGGCGTGCGGTGGTCGCCGCCTCGCAGTTTATCCACCGCCGCAAGGGCACCAT 198037 Query 20977 CGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGGGCTACCTGATTCGCGTCATCGAGTGGTG 21036 | ||| | ||||| | ||||||||||||||| || ||||| |||| |||||||| Sbjct 198038 CTCGGCGATCCGCCGGGTGGTGGAGCCGCTGGGGTATGTGATTAACGTCCATGAGTGGTG 198097 Query 21037 GCAGACCAACCCGCCCGGGCCGCGCGGGTCGTTCCGGCTCGATGTGGGCGTGCTGCAAAC 21096 ||| |||| || |||| ||| | ||||| || ||| | ||||||||| || | Sbjct 198098 GCAAACCA------GCGAACCGCCCGGCACCTTCCGCCTTGATATCGGCGTGCTGGAATC 198151 Query 21097 CGGCATCGACGAGGCCATGTATGCCGAGCTGGAACGCCTCATTGACGACGCCAAGCC 21153 ||||| || || || |||| | ||| |||| || || || | ||| || || || Sbjct 198152 AGGCATTGATGAAGCGATGTTTAACGAAATGGAGCGGCTGATCGGCGATGCAAAACC 198208 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 19542 GCGACATCCTCACCACGCCGATCGGCTCGCGGGTGATGCGCCGCGACTACGGC-AGC-GA 19599 |||||||||| || ||| |||||||||||||||||||| ||||||||| || | Sbjct 196621 GCGACATCCTGCTGACCCCGCAGGGCTCGCGGGTGATGCGCCGTGACTACGGCTCGCTGC 196680 Query 19600 GGTCCCCGATCTGATCGACCAGCCGCTGAACCCGGCAACCCGCCTGCGCACCATGTCCGC 19659 ||| || ||| |||||||||||| |||| | | ||||||| | ||||| || Sbjct 196681 TGTCGGCG--CTGCTCGACCAGCCGCAGAACGAGACGCTGCGCCTGCAGATTATGTCGGC 196738 Query 19660 CGCCGTGTCGGCGCTGGTGCGCTGGGAGCCGCGTATC 19696 | | ||||||| |||||||||||||||| ||| Sbjct 196739 CTGCTACATGGCGCTGCTGCGCTGGGAGCCGCGCATC 196775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127875288807784