Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq122 232 8e-56 seq83 197 2e-45 >seq122 Length=4874392 Score = 232 bits (256), Expect = 8e-56 Identities = 429/624 (69%), Gaps = 18/624 (3%) Strand=Plus/Plus Query 41167 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41226 |||| | ||| | || ||||| |||||| | || ||||| || || ||||| ||||| Sbjct 2805867 TAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAG 2805926 Query 41227 CAGTTGCGTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT-- 41284 | |||||| ||||||| | || || ||| | ||| | || || ||||| Sbjct 2805927 CTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAG 2805983 Query 41285 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCG 41343 ||||| |||||||| |||| || ||||| |||||||| |||| || || | ||| || Sbjct 2805984 CGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCG 2806043 Query 41344 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTG 41403 || |||| ||||| || ||||||||| | || || ||| || ||||||| Sbjct 2806044 TGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTA 2806103 Query 41404 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGC 41463 || || | ||||| ||||| || ||||| || || || ||||| || || ||||| || Sbjct 2806104 TAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGC 2806163 Query 41464 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 41523 || ||| || || || |||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 2806164 GACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAA 2806223 Query 41524 CAAAGGTGTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTT 41583 | || ||||| |||||| | ||||| |||| || ||||| ||||| ||| | | Sbjct 2806224 CCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCT 2806283 Query 41584 GATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGC 41640 ||||||| |||| | | || || | || || |||||||||| | |||| ||| Sbjct 2806284 GATGTATCAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC 2806342 Query 41641 AAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTA 41700 | || ||||||| || |||| || || |||||| |||||| || || || Sbjct 2806343 -----CTGGCTTGTATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTA 2806394 Query 41701 TACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGCATTAAAGCAGCAGACTTATT 41760 |||| | || |||||| | | |||||| | ||| | || || | ||| | || Sbjct 2806395 CACCAAATACGAGAAAGACGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTGTT 2806454 Query 41761 CCAGTTGCTTGTTCAGGAACGCGC 41784 | | || | | ||||||||||| Sbjct 2806455 CTCGCTGATGATGCAGGAACGCGC 2806478 Score = 116 bits (128), Expect = 4e-21 Identities = 190/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 40066 CTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTG 40125 ||||||| | || ||| ||| | ||||||||||| ||||||||| | || ||| Sbjct 3442488 CTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTG 3442429 Query 40126 GATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAA 40185 ||| | ||||| || ||||| ||| |||||||||||| ||| |||| || Sbjct 3442428 GATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAG 3442369 Query 40186 CTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATC 40245 || || || ||||||||| || ||| ||||| | || |||||||||||||| Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 3442309 Query 40246 GCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTAGGTGAT 40305 ||| ||||||| | ||| |||||| || || | |||| ||||| |||||| Sbjct 3442308 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 3442249 Query 40306 CTGGTTTGGACAGGTGGTGATGTCCATATCTACA 40339 | || ||||| ||||| ||| |||| | |||| Sbjct 3442248 TTTGTCTGGACCGGTGGCGATACCCATCTGTACA 3442215 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42974 GAAAAACAACTATCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATG 43033 ||||| || || || ||||||||||| |||||||||||||| | ||| ||| ||||| Sbjct 2807759 GAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGTATT 2807818 Query 43034 CAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAA 43093 | ||| |||| || ||||| ||| ||| ||| |||||| | ||||| Sbjct 2807819 GACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTATCAG 2807878 Query 43094 ACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCT 43153 || ||| | || | ||||||||||| |||| ||| ||||||| || ||| | ||| Sbjct 2807879 ACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATCTC- 2807937 Query 43154 GATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 43192 ||| || ||||||| ||||| ||||| ||||| ||| Sbjct 2807938 GATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 2807977 Score = 100 bits (110), Expect = 3e-16 Identities = 244/365 (67%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 154259 CAACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGG 154317 ||| || || || || || || |||||| | |||| || |||||||||||| |||| | Sbjct 3819927 CAATGAAAATGCCAATAAGGATAGCAAGG-TGATCCCCACTCAGCGCGATCTGCTGGCCG 3819985 Query 154318 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGC 154377 | ||||| || ||||||| ||| ||| | || || || || | | || || | Sbjct 3819986 GGATCGTCGCCAAACACTACGCCCGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCC 3820045 Query 154378 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 154437 |||| || || ||||| ||||| ||||| || ||| ||||| || | Sbjct 3820046 ATGAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTA 3820105 Query 154438 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 154497 ||||| ||| | || || || |||||| | | |||||||| ||||||||||| | Sbjct 3820106 ACTGCATGCTGATCGACCTGCGGGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCG 3820165 Query 154498 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 154557 | |||||||| || || || ||| || || || | | || ||||||| ||| | Sbjct 3820166 AGATCGAACCGCCTAAGTCGATCTCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCC 3820225 Query 154558 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TTGATAAAGTGCTGGC 154615 || | || || ||||| || || ||| || || || ||||| |||||||||| Sbjct 3820226 AGGTCGCCAGCCATATTTACGGGGGCACCACCATT--AACCGTATTGATGAAGTGCTGGC 3820283 Query 154616 TCCGT 154620 |||| Sbjct 3820284 GCCGT 3820288 >seq83 Length=912621 Score = 197 bits (218), Expect = 2e-45 Identities = 300/426 (70%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 41174 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41233 || ||||||||||| || |||||||| || || || || || || || || | ||| Sbjct 579776 TCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGC 579835 Query 41234 GTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 41290 || | || || | || ||| | | | ||| | || || || ||| || ||| Sbjct 579836 GTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATC 579892 Query 41291 GTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATG 41350 || || || |||||||||| || || |||||| | |||||||| | ||||| || | Sbjct 579893 GTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTA 579952 Query 41351 GGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACAT 41410 || |||||||||||||||||| | ||||| || |||||||||| ||||| Sbjct 579953 GGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACAC 580012 Query 41411 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTG 41470 | ||||| || || ||||| || || ||||| ||||| || || ||||| || || || Sbjct 580013 TTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTG 580072 Query 41471 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 41530 | ||| || || ||||| |||||| |||||| | | | || |||||||| ||| ||| Sbjct 580073 TTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGT 580132 Query 41531 GTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 41590 ||||| |||||| | |||||||| ||||| ||||| || | ||| | | |||||| Sbjct 580133 GTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTAT 580192 Query 41591 AAGCGT 41596 | ||| Sbjct 580193 CAACGT 580198 Score = 122 bits (134), Expect = 1e-22 Identities = 296/441 (67%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 42338 GATTGGGAATGGTTGCGCGACGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCC 42397 ||||||||| | || || || |||||||| | | ||||||| ||||||||||| ||||| Sbjct 580952 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 581011 Query 42398 GCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACCG 42457 || || ||||||| || | ||| || | || | |||||||| || || || Sbjct 581012 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 581071 Query 42458 CCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAAC--CAGGTAGTAC 42515 || ||||| ||| ||| | ||| | |||||||| ||| ||| || ||||| || | Sbjct 581072 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGT--ATTTTACGTCAGGTCGTTC 581129 Query 42516 C-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCGGT 42574 | || || || | | | ||| ||||| || ||| |||| | | Sbjct 581130 CAGAGTATGAGCGCTTACA-AGATCAGTATGAGCTGCTATGGGAAATG------CCTTCT 581182 Query 42575 AATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCT 42634 || | ||||| | | ||| | |||||||||||||||| || ||||| |||||| Sbjct 581183 AACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATCTCT 581242 Query 42635 GCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATC 42694 ||||||||||||| |||||| | | | | | || ||||| | || | | | Sbjct 581243 TCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGT-ACCGATGCAGCAGTT 581301 Query 42695 ATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAACAC 42753 | || | |||||||| ||| | | | |||||||||||| || || ||||| ||||| Sbjct 581302 ACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAACAC 581361 Query 42754 CCGCGACGGTGCAGGTGAAGA 42774 || || ||||| |||||| Sbjct 581362 GCGTGATGGTGC---TGAAGA 581379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569974574621880