Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq83 163 3e-35 seq122 161 1e-34 >seq83 Length=912621 Score = 163 bits (180), Expect = 3e-35 Identities = 307/446 (69%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 135351 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCC 135410 ||| || || || || ||||||||||| || || || || | |||||| |||| || || Sbjct 580189 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 580130 Query 135411 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGA 135469 || || || | || ||| || ||||||| || || |||||||| |||||| | | Sbjct 580129 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 580071 Query 135470 GAGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAAT 135529 | ||||| || || || || | |||||||| ||||| || || ||||| ||||| || | Sbjct 580070 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 580011 Query 135530 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 135588 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 580010 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 579952 Query 135589 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATG 135648 ||| ||||| |||||| ||||||||||| || || || | || || || | | Sbjct 579951 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 579892 Query 135649 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 135708 || ||| | | || ||||||| | || || ||| || || | ||| || Sbjct 579891 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 579832 Query 135709 GAACTAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATT 135768 || || |||||||| || || || || || |||||||| || || ||||| | || ||| Sbjct 579831 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 579772 Query 135769 TGCTTATTCGAAACAGCATTATAAAA 135794 | |||| || |||| |||||| Sbjct 579771 TTAAAGGTCGACACGGCATCATAAAA 579746 >seq122 Length=4874392 Score = 161 bits (178), Expect = 1e-34 Identities = 317/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 135307 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135366 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 135367 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCCTTATTGTTCTTTAAC 135426 || ||||||||||| | ||| || | |||||| |||| ||||| |||||||| | | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 135427 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135486 || | ||| ||||| | || | ||||||||||||||| | || ||||| || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 135487 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135546 || | ||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 135547 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 135604 ||| || || ||| ||||||| | |||| || ||| || || | Sbjct 2806091 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 2806034 Query 135605 CAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 135664 | ||||| || |||||||| ||||||| || ||||| | || || | | || Sbjct 2806033 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 2805974 Query 135665 CGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCGT 135723 |||| ||| | ||| | ||| | | ||||||| || || || || || ||||| Sbjct 2805973 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 2805915 Query 135724 GTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGAT 135767 || ||||| ||||| || | |||||| || || ||||| || || Sbjct 2805914 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 2805871 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53990 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 54049 ||| ||||||||||||| || |||||||||||||| ||||| |||| | || || || Sbjct 3215646 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 3215705 Query 54050 CACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 54109 ||| || ||||| ||||||||||| || |||||||| || ||||| || || | || || Sbjct 3215706 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 3215765 Query 54110 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 || || | |||| || || ||||| || |||| |||||| || || || || Sbjct 3215766 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 3215822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 134440 CCTTCTTTCGATCCTTTAA--CCGATACAATCCCGCGAGGCGGTTCAATACCGTTTGTGC 134497 || |||||||| |||||| | |||| | ||||| || |||||||||||||| ||| Sbjct 2807207 CCGTCTTTCGACGCTTTAATGCTGATATGA--CCGCGCGGTGGTTCAATACCGTTGGTGG 2807150 Query 134498 TGTTAGACACCTGAGAAGACGACTCACAAGGCATCAGCGCCGAAAGCGTACTGTTACGAA 134557 ||| || | ||| ||||| | |||| | |||||||| || || |||||| ||| || | Sbjct 2807149 CGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTAGAGTTGCGCA 2807090 Query 134558 TGCCATATTTTTTCAGGTCTTCGCGCAGTTCTTCCCAATCCA 134599 ||| | |||||| ||| ||||| ||||||| |||| Sbjct 2807089 GGCCGTGGGTTTTCACCGATTCACGCAGCGCTTCCCAGTCCA 2807048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522787869040320