Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq122 113 5e-20 >seq122 Length=4874392 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || |||||||||||||||||||||||| | || ||||| || || |||| ||| Sbjct 3442758 ATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGACGGTTTTCCGCTGGTCACCACCAAG 3442699 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 ||| ||| || || ||||| || || ||||||||||| || || || || ||| Sbjct 3442698 AAGTGCCATTTGCGCTCTATCATTCATGAGCTGCTGTGGTTCCTTAACGGTGACACCAAC 3442639 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 ||| || || | || | || || ||||||||| || ||||| |||| || || Sbjct 3442638 ATCGCCTACCTGAAGGAAAATAAGGTGTCGATCTGGGACGAGTGGGCCGATGAAAAGGGT 3442579 Query 142420 AACCTCGGACCTGTCTACGGCAAGCAGTGG 142449 ||||||| || || || ||||| |||||| Sbjct 3442578 GACCTCGGGCCGGTTTATGGCAAACAGTGG 3442549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500460017168880