Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq122 187 3e-42 seq83 145 8e-30 >seq122 Length=4874392 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 62329 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGA 62388 ||| || || |||||||||||||| | || ||||||||||||||||| || |||| ||| Sbjct 3215637 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 3215696 Query 62389 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATG 62448 |||||| || || ||||||||||| || || ||||||| |||||||||||| || || || Sbjct 3215697 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 3215756 Query 62449 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 62508 ||| || || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || Sbjct 3215757 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 3215816 Query 62509 TTC 62511 || Sbjct 3215817 CTC 3215819 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 62336 CTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 62395 |||| ||| |||||||| | ||| || || |||||||||| |||||| ||||| || Sbjct 1181315 CTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAA 1181374 Query 62396 CGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACT 62455 || || ||||| || || || || ||||| ||||||||||||||||| || | | | Sbjct 1181375 CGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATC 1181434 Query 62456 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 || || ||| ||||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 1181435 GCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 1181493 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 142382 CCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAAC 142441 |||||||||||||| | | ||||| | || ||||| ||| || ||||| |||| | Sbjct 2806265 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 2806206 Query 142442 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATA 142501 ||| | || ||||| | |||||||| || || || || || ||||| || || | Sbjct 2806205 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 2806146 Query 142502 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142561 || || ||||| || || || || || || ||||| || || |||| ||||| || || Sbjct 2806145 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT-GCAGCC 2806087 Query 142562 GTATGTCGAA--CTTCACCCATACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGT 142619 | ||| ||| ||||||| | ||| || ||||| | ||| ||| Sbjct 2806086 G-GTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 2806028 Query 142620 TGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTA 142678 | || |||||||| || || | ||||| || | | ||| | ||| || || |||| Sbjct 2806027 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGCGTTA 2805969 Query 142679 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGA 142738 || || | | || ||| ||||| | ||| || ||||||||| || || Sbjct 2805968 ATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 2805909 Query 142739 GTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAA-CTTGATGAGTAGAAACGGCATC 142797 || || | || | ||||||||| || |||| |||| ||| | | || || | ||||| Sbjct 2805908 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAG-GTGGAGATCGCATC 2805850 Query 142798 ATAAAAACG 142806 || ||||| Sbjct 2805849 GTAGAAACG 2805841 >seq83 Length=912621 Score = 145 bits (160), Expect = 8e-30 Identities = 313/467 (67%), Gaps = 1/467 (0%) Strand=Plus/Minus Query 142341 TTTTACCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCTAA 142400 |||||||| | |||| ||| || | || || || | ||||| || | || | | Sbjct 580207 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 580149 Query 142401 TACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGT 142460 |||||| | || || || |||||||||||| || || | | | || | ||| |||| Sbjct 580148 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 580089 Query 142461 GCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATT 142520 ||||||| || ||| || ||| || ||||| || || | || ||||| || ||||||| Sbjct 580088 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 580029 Query 142521 TTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCA 142580 | || || || ||||| ||||| |||| || ||| ||| ||||| | ||||||| Sbjct 580028 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 579969 Query 142581 TACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTT 142640 || || ||| ||||||| ||| | ||||||||||| || || |||| Sbjct 579968 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 579909 Query 142641 TAGAAATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142700 |||| |||| || || | ||||| ||| ||||| | ||| ||| || Sbjct 579908 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCAC 579849 Query 142701 CTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTG 142760 || |||| || || ||| |||||||| || || || | || ||||| |||| Sbjct 579848 ACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTG 579789 Query 142761 GGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGA 142807 | || || || |||| || | || || |||||||||||||| ||| Sbjct 579788 GCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540828056608560