Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq122 100 3e-16 seq83 89.7 5e-13 seq1959 84.2 2e-11 >seq122 Length=4874392 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 76785 ATTTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTA 76844 || ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 217169 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 217228 Query 76845 ACC-ACTGAGCTACGGGGCC 76863 ||| ||||||||| |||||| Sbjct 217229 ACCAACTGAGCTATGGGGCC 217248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 269/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 4039 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 4098 || || || || || ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 2805877 CTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTA 2805936 Query 4099 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 4158 || || | ||| |||| | || || || || || || ||| ||||| | Sbjct 2805937 CTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAG 2805996 Query 4159 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 4218 || || || | || || || ||||| || | | ||| || |||| | || ||| Sbjct 2805997 TACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGC 2806056 Query 4219 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTG-GTTCCTTTC-ATAA--AATATCT 4274 || ||||| |||||| | ||||| || ||| |||| ||| |||| | | | Sbjct 2806057 CCGATCCGCGGCGGTGAAGCATTCCACACCGG-CTGCATTCCGTTCTATAAGCACTTCCA 2806115 Query 4275 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCT 4333 ||| | || | ||||| |||||||| ||||| | || ||||| |||| | | || | Sbjct 2806116 GACCGCGG---TGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTT 2806172 Query 4334 ATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTC 4393 || ||| || |||||| || | || | |||| |||||||||||||| || Sbjct 2806173 CTA-CCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCG 2806231 Query 4394 TTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 4440 |||||| ||||| | || | ||| ||||| || | ||| | ||| Sbjct 2806232 TTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAAC 2806278 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 76382 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCA 76441 || ||| ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| Sbjct 1434150 CTTCTTAAATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 1434209 Query 76442 CCGTTCTACCGACTGAACTACA 76463 |||||||||||||||||||||| Sbjct 1434210 CCGTTCTACCGACTGAACTACA 1434231 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 |||||||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 2497475 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 2497416 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 2497415 ACCGACTGAACTACA 2497401 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 2544534 AATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 2544475 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 2544474 ACCGACTGAACTACA 2544460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76389 AATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCT 76448 ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| ||||||| Sbjct 2590766 AATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 2590707 Query 76449 ACCGACTGAACTACA 76463 ||||||||||||||| Sbjct 2590706 ACCGACTGAACTACA 2590692 >seq83 Length=912621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 76382 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCA 76441 || ||| |||||||| | || | ||||| ||||| | |||||| ||||||||||||| Sbjct 426616 CTTCTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 426557 Query 76442 CCGTTCTACCGACTGAACTACA 76463 |||||||||||||||||||||| Sbjct 426556 CCGTTCTACCGACTGAACTACA 426535 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 76382 CTACTTCAATTTGGCGACGATGGCAGGACTTGAACCTGCGACATATGGATTAACAGTCCA 76441 || ||| ||| |||| | || | ||||| ||||| | |||||| ||||||||||||| Sbjct 400996 CTTCTTAAATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCG 400937 Query 76442 CCGTTCTACCGACTGAACTACA 76463 |||||||||||||||||||||| Sbjct 400936 CCGTTCTACCGACTGAACTACA 400915 >seq1959 Length=43063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 76786 TTTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAA 76845 |||||||||||| ||||| ||||||||| |||| ||||||||||||| ||||||| Sbjct 8189 TTTGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAA 8130 Query 76846 CCACTGAGCTACGGGGCCAAA 76866 || |||||||| ||||| || Sbjct 8129 CCGCTGAGCTAAAGGGCCGAA 8109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503218201220640