Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq83 100 6e-16 >seq83 Length=912621 Score = 100 bits (110), Expect = 6e-16 Identities = 329/502 (66%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 24412 GGTATTAATATGGGCCGTATTCGTGCTCTAGACTCTGAGATTCGTTCAGGTGATGCAGTA 24471 ||||| ||| |||||||||||||| |||| | || ||| ||||| || | Sbjct 579923 GGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTTC 579982 Query 24472 CATACTGGGTTGATTCCTTTTATCGCAGCAACTGC-TAAGACCGTTAAAAGCTGCTCACA 24530 ||||| ||||| ||| || | | || | | | | |||| ||| ||||| || Sbjct 579983 CATAC-CGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 24531 GGGTGGTGTGCGTGGTGGTGCAGC--AACTGTTCACTTCCCATTGTGGCATTTGGAGTTT 24588 || || || || || ||||| || |||||| | ||| ||||||| ||||| || Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTT--TTACCCTATGTGGCACTTGGAAATT 580099 Query 24589 GATAACCTAGTAGTACTTAAAAATAACAAAGGTACAGAGTTTAACCGTGTACGTCAACTA 24648 || | | || |||| || ||||||||| ||| || ||||||||| ||||| ||| Sbjct 580100 GAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTA 580159 Query 24649 GACTATTGTTTCCAAGTAAACAAAACTTTATATCAACGTTTGGTTGATGGAAAGAACATT 24708 || || | | ||| | |||||| | ||||||||| |||| | || | || Sbjct 580160 GATTACGGCGTACAAATCAACAAACTCATGTATCAACGTCTGGTAAAAGGCGGCGATATC 580219 Query 24709 ACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATGAAGCATTCTGTTCTGACCaaaaa 24768 | | || ||||| || || || |||||||| || || |||| |||||||| | Sbjct 580220 TCGCTATTCAGTCCATCGGATGTGCCAGGGCTATACGATGCCTTCTTCGCTGACCAAGCA 580279 Query 24769 gaatttgaaaaactatataaaaaatacgaagctgaccaaagcatccgt----aaaaaaTC 24824 || |||||| || || | | |||||||| || | || ||| ||||||| Sbjct 580280 GAGTTTGAACGTCTTTACACTCAGTACGAAGCGGATGATTCTATTCGTAAGCAAAAAAT- 580338 Query 24825 CGTACCTGCTGTTGAAGTATTCAGCACT-CTAATGACTGAACGTGCAGAAACTGGTCGTA 24883 || || ||||| | || || || | ||| |||||||| ||||| |||| Sbjct 580339 --TA-AAGCCGTTGATCTGTT-TGCCCTAATGATGCAAGAACGTGCTTCGACTGGCCGTA 580394 Query 24884 TCTATATTCAAAATATTGACCA 24905 | ||||| ||||| ||||||| Sbjct 580395 TTTATATCCAAAACGTTGACCA 580416 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23667 CGTAACCAAGCGTAATGGAATGAAAGAGCCGTTATCA--TTGGATAAGATCCATCAAATT 23724 ||| || ||||| ||||| | |||| | ||||| ||||||||||| || | | | Sbjct 579178 CGTGACTAAGCGCAATGGCCAGCAAGAACG--TATCAACTTGGATAAGATACACCGAGTA 579235 Query 23725 TTATTTTTCGCTGCTGAAGGGTTAAGTGGTATTTCCGTTTCTGAAATTGAAATCCGTGCA 23784 | || |||||||| || |||| | | |||||||| || ||||| | || | Sbjct 579236 CTTGATTGGGCTGCTGAGGGATTAAATAACGTCTCCGTTTCACAAGTTGAATTACGCTCT 579295 Query 23785 CAGCTTCAGTTTTATGAAGGTATAGAAACCAGTACTATTCATGATATTCTAATAAAAGCA 23844 || | ||||||||||| || || | || | |||||||| | | | || ||||| Sbjct 579296 CATATCCAGTTTTATGATGGCATCAAGACTTCTGACATTCATGAAACTATCATTAAAGCC 579355 Query 23845 GCAGCAGAACTTATTTCTGAAGATACGCCGAACTATCAATACGTTGCTG 23893 ||||| || || ||||| ||| |||| ||||||||||| | |||| Sbjct 579356 GCAGCGGATCTGATTTCGCGCGATGCGCCAGACTATCAATACCTCGCTG 579404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115081713435547