Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025452.1 Length=155346 Score E Sequences producing significant alignments: (Bits) Value seq122 136 4e-27 seq83 120 3e-22 >seq122 Length=4874392 Score = 136 bits (150), Expect = 4e-27 Identities = 286/424 (67%), Gaps = 2/424 (0%) Strand=Plus/Minus Query 26857 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATGCGACGTTCGCGGTT 26916 |||||||| | |||||| ||| | ||| | |||||||| || |||| ||||||| Sbjct 2806299 CAGGCGCTGATACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTT 2806240 Query 26917 CTCTTCTGTTCCACGGTTGTTCTTCAGGACAACGACGTCATCGAACTGGTAG-TGCCACA 26975 |||| || |||||||||||||| || | | | || | || || ||||||| Sbjct 2806239 GCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCA-CTTCCAGATGCCACA 2806181 Query 26976 GAGGGATGTACCCTGTCGCTGCACCGCCGCGAATGCCGCCCTGAGAGCACGACTTGAGCG 27035 ||| | || ||||||||||||||||| | ||||||||||||||| ||||| | || Sbjct 2806180 TTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCG 2806121 Query 27036 CCCCAGTGAGATACTTGATGAACGGGATCAGGCCTGTATGAACCATCTCTCCGCCGCGAA 27095 | || | ||| |||||| || ||| || || | || |||||||| | Sbjct 2806120 CGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGA 2806061 Query 27096 TAGGACTACCAATACCACGGATTGCCCCGAAGTCAAAACCGATACCAGCGCGTTTGGACA 27155 | || || || | ||||||| ||| || || |||||||| || || | || | Sbjct 2806060 TCGGGCTGCCCAGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAA 2806001 Query 27156 CATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTCTTGA 27215 | || | || || | ||| || ||||| || || || ||| |||| || || | Sbjct 2806000 CGTACTTCACAATCGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAA 2805941 Query 27216 TCAACACACATGAGCTGAACTGACGGGTAGGAGTACGAACACCGGCCATGATCGGGGTTG 27275 ||| || || ||||||||||| || || || || || || |||| ||| || || || | Sbjct 2805940 TCAGTACGCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCG 2805881 Query 27276 GAAG 27279 | || Sbjct 2805880 GCAG 2805877 >seq83 Length=912621 Score = 120 bits (132), Expect = 3e-22 Identities = 282/423 (67%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 26855 ACCAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATGCGACGTTCGCGG 26914 ||||| || | | |||| | |||||| || | ||||| || | | |||| | ||| Sbjct 580203 ACCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGG 580144 Query 26915 TTCTCTTCTGTTCCACGGTTGTTCTTCAGGACAACGACGTCATCGAACTGGTAGTGCCAC 26974 || |||| |||||||| || |||||||| | | | || | | |||||||| Sbjct 580143 TTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCAC 580084 Query 26975 AGAGGGATGTACCCTGTCGCTGCACCGCCGCGAATGCCGCCCTGAGAGCACGACTTGAGC 27034 | |||| || |||||| ||||| ||||| | |||||| || ||||| || || | Sbjct 580083 ATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACG 580024 Query 27035 GCCCCAGTGAGATACTTGATGAACGGGATCAGGCCTGTATGAACCATCTCTCCGCCGCGA 27094 ||| || | ||| ||||||||| || ||||| | || || || || Sbjct 580023 GCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGG 579964 Query 27095 ATAGGACTACCAATACCACGGATT-GCCCCGAAGTCAAAACCGATACCAGCGCGTTTGGA 27153 || || || || | |||| || | || | | | | | ||||| || ||||||| || Sbjct 579963 ATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATA-CCGATCCCTGCGCGTTGTGA 579905 Query 27154 CACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTCTT 27213 || || | |||||| | | | || |||||||||||||| | | | || ||| || Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 579845 Query 27214 GATCAACACACATGAGCTGAACTGACGGGTAGGAGTACGAACACCGGCCATGATCGGGGT 27273 ||| | ||| ||||||||||| || || || || || || || || |||||||| || || Sbjct 579844 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 579785 Query 27274 TGG 27276 || Sbjct 579784 AGG 579782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496940292740880