Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025458.1 Length=43510 Score E Sequences producing significant alignments: (Bits) Value seq1959 172 2e-38 >seq1959 Length=43063 Score = 172 bits (190), Expect = 2e-38 Identities = 429/640 (67%), Gaps = 25/640 (4%) Strand=Plus/Plus Query 40855 CCTTCCCACTGGCAAGCGTGGCCGTCATCATCCCAAGCGG-TAGCCTTTTCGGTGCCGCT 40913 || ||||||| | ||| | ||| ||| || || ||| |||| ||||| ||| Sbjct 28452 CCGTCCCACTCGACAGCTTCGCCATCAACA----AATCGGGTAGCACGCTCGGTACCGGG 28507 Query 40914 AATAATGAAGTTACCAAAAACGTCATGCGCTAAACCTGCATA---AGCGTCATCACTGCG 40970 | ||||||||||| || |||||| || | ||| | || || ||||| |||| Sbjct 28508 TACGATGAAGTTACCGAATCTGTCATGAGCAACACCATCGTACATAGGGTCAT---TGCG 28564 Query 40971 GCGTTTTTTATCAGATACGCAATTGCACGCTGGACACGTCACGCTGATTTCTGGC-GACT 41029 ||| ||||| | || ||||| ||| | || || ||| |||| | | |||| Sbjct 28565 GCGCTTTTTCTGGCTTATGCAATGGCAGGAAGGGCAT-TCAACCTGAATAGGAACTGACT 28623 Query 41030 CACCCGATTTTACCCTGGCGTTTATTTCTGGGGTAAAAATGTCAGACTGTAATTTGTGGC 41089 | || | | || || ||||| || ||||| || |||||| ||| || ||||||| Sbjct 28624 CGCCAGCAATAGCCTTGTTCTTTATCTCCGGGGTGAATATGTCATCCTGCAAGTTGTGGC 28683 Query 41090 GCTCGATATTTTCGGCAAAGTCGGAGATTAAGCAATATTCTTTATCATCATGTAAACGCA 41149 | |||||| || || || || || | ||||| || ||||| ||| || |||| Sbjct 28684 GGCTGATATTCTCTGCGAAATCCAGTATCAGGCAATCGTCCTTATCTGGATGCAAGCGCA 28743 Query 41150 GACCGCGGCCAATGATTTGTTGAAACAAACTAGCCGATTCAGTGGCGCGCATGATCACCA 41209 | || ||||||| || || || |||| | || || ||||| |||||||| | | | Sbjct 28744 GCCCACGGCCAACAATCTGCTGCAACAGGCCAGGTGACTCAGTAGCGCGCATAACTGCAA 28803 Query 41210 CGTAATCAACGTGTGGAGCATCAAAACCTGTAGTCAAAATGTCAACGTTAACAATGTATT 41269 ||| ||||| || ||||| || || || || | | |||||||||||| | ||||| Sbjct 28804 TCAGATCGACGTGAGGCGCATCGAATCCCGTGGTAAGCACGTCAACGTTAACCAGGTATT 28863 Query 41270 TATAGCC-TTGAACCTTAAACCGTTCAATTTTATCATCACGCTCTTTTTTCTTAAGCTTG 41328 | || || || | || || || || | ||||||||| |||||| |||||| Sbjct 28864 T-TACCCGCTGCGCTTTGAATTCTTTGATGTATAGTTCACGCTCTGATTTCTTCAGCTTG 28922 Query 41329 CCGGTGA----TCACTTCTACTTCACCAGCAGGTAAGTAGCTTGCTATTTCCTCAGCATG 41384 || |||| | | | | ||| | || ||||||| ||||||||| |||||||| Sbjct 28923 CCAGTGACTACGCGCGTTAAGTTC----GATGGCAAGTAGCCTGCTATTTCTTCAGCATG 28978 Query 41385 GCTAATGGTGGCAGCAAATATCATCACGCCCATTTTGTTAA-CTGAGTTATCAATAACGC 41443 ||| || ||||| || || |||||||| |||| | || || ||| | | || | Sbjct 28979 GCTGATAGTGGCCGCGAAGATCATCACACCCA-TACGTGAATCTGCATAACTCATGATCT 29037 Query 41444 GCTGAATGATGCGCTCTGTTTTGGTGTTGCCAGAAAATGT 41483 ||||| |||||||||||| || ||||| || |||||| Sbjct 29038 TCTGAACGATGCGCTCTGTCTTTGTGTTTCCGTTAAATGT 29077 Score = 147 bits (162), Expect = 6e-31 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 496 CTTGGAAATTATGGCTGTCAATTACCTAGCGGTCGCAAGCATGGCCCTTGCCCTGTATGT 555 |||| || ||||| ||||| | || | || ||| | || ||||| |||||||||||| Sbjct 31863 CTTGAAAGCTATGGTTGTCACCTTCCAAATGGCCGCCACCACGGCCCATGCCCTGTATGT 31922 Query 556 GGCGGGAAGGACCGTTTCCGCTTTGATGATAAAAATGGCCGTGGTACGTGGTTCTGTTCT 615 || || |||||| | ||||| |||||||| ||| ||||||||||||| |||||||||||| Sbjct 31923 GGTGGAAAGGACAGGTTCCGTTTTGATGACAAAGATGGCCGTGGTACATGGTTCTGTTCT 31982 Query 616 CAGTGTGAACCACAAAGCGGCGGCGGGTTACTTCTGCTGTCTCGCT 661 |||||||| || ||| |||||||| | | |||||||| |||| Sbjct 31983 CAGTGTGATCCGCAATCAGGCGGCGGCCTTTTGCTGCTGTCGCGCT 32028 Score = 143 bits (158), Expect = 7e-30 Identities = 285/422 (68%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 6388 CAGCACGGCGCAAAAGCAACAAGTGCAGAAATGGCCGTATTTACGGGAGTATGTTCAAAG 6447 |||||||| | | |||| | |||||| |||| || | | ||||| || | ||| Sbjct 37829 CAGCACGGTTCTAGCGCAAGCAATGCAGAGCTGGCTGTTGTATCAGGAGTGTGCGCCAAG 37888 Query 6448 TATTCTCTAAACCCACTCGTTAAAGAATGTGCAGCATTTGTCAGTGGCGGAAAGTTACAA 6507 ||| || |||||| | || || || || |||||||| |||| || || ||| |||| Sbjct 37889 TATGACCTTAACCCAATGGTGAAGGAGTGCGCAGCATTCATCAGCGGAGGTAAGCTACAG 37948 Query 6508 GTAATTGTGATGATCGACGGCTGGTATAAAATGGTTAATCGTCAAGAAAATTTTGACGGT 6567 || | |||||||||| ||||||||| || || || ||||| || || || || Sbjct 37949 GTGGTCCTGATGATCGATGGCTGGTATCGCATCGTAAACCGTCAGCCTAACTTCGATGGC 38008 Query 6568 GTTGAGTTTGAAGATAAATTTAGCGATGACGGGAAGATAATTTCTATAACCTGCAAAATG 6627 ||||| ||||| || | | ||| | || | | | || |||||||| ||| Sbjct 38009 GTTGAATTTGACGACCACATCGACGACAAAGGCGCACTGACAGCAATCACCTGCAAGATG 38068 Query 6628 CACATTAAAAACCGATCTCACCCGGTATGCGTGACTGAATATTTAGCAGAATGTAAGGAC 6687 | || ||| |||| | ||||| ||| ||||||||| | ||||| || || Sbjct 38069 TATATCAAAGGCCGAAGCCGTCCGGTTGTCGTAACTGAATATATGGCAGAGTGCCGCGAT 38128 Query 6688 CCTAAATCAACGGTGTGGACTCGATGGCCAGCTCGCATGTTGCGTCACAAAGCTTATATT 6747 ||| || | || ||| ||||||||| || ||| |||||||||| || || || Sbjct 38129 GGTAAGTCTAGCGTTTGGCAGAAATGGCCAGCACGAATGCTGCGTCACAAGGCATACATC 38188 Query 6748 CAGGCCGCACGCATTGCATTCGGCATCAGCGAAGTTATCGATGATGACGAAGCGAGCCGT 6807 || ||| ||||| | || ||||||||||| | ||||| | |||||||| ||||| Sbjct 38189 CAATGCGCCCGCATGACGTTTGGCATCAGCGACATGATCGACAACGACGAAGCCAGCCGC 38248 Query 6808 AT 6809 || Sbjct 38249 AT 38250 Score = 105 bits (116), Expect = 2e-18 Identities = 234/344 (68%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 1582 GACGTTGATAACCCACCAGGGTTAGCTGGTGATATTGTTCGCTACATGAAGTCAGGCGCT 1641 || ||||| | ||||| ||| | |||||| | || || ||||| | |||||| Sbjct 32964 GATGTTGACCATCCACCTGGGCTGGCTGGTAAGATCGTGGATTACATCCGCGCTGGCGCT 33023 Query 1642 CACCGCAAGCTTGAGGGTGGCGCGTTTGCTGCTATGGCTATTCAGTGTATGGCAATGGCT 1701 || ||| |||| |||||||| | | || |||||||||||||| ||||| |||||| Sbjct 33024 CATCGCGAGCTGCGTGGTGGCGCTTACTCAGCCATGGCTATTCAGTGCATGGCTATGGCT 33083 Query 1702 GGTAGCGGCTTGCGTGGTT--TTAGAAACAGTAAGCTAAGCTTGATCACCATCACTTTGG 1759 ||| ||| | | ||| | | | ||| ||| ||| | ||||| | || ||| Sbjct 33084 GGTGCCGGAATACCTGGATGGATGGGGACA--AAGACGAGCCTCATCACACTAACCCTGG 33141 Query 1760 GTGTTTCA-GCGTCAGGTAAGGACCGCGCGCA-GTCAGTATCAAAAAACTTACTTGGTGA 1817 |||||| ||| | || ||||| | || || | | |||| ||| | ||||| | || Sbjct 33142 CAGTTTCAGGCGGC-GGCAAGGAGAGGGCACAGGACGTTATC-AAAGAGATACTTTGCGA 33199 Query 1818 GTCTGGCATCCACGTTTATGGCGATATTCGTTCTGATAAAGATATTATCCGCGCTGCAGC 1877 | |||||| | ||||| || ||||| || || || ||||| || | || | || | Sbjct 33200 GGCTGGCAGGCCAGTTTACGGTGATATCCGCTCAGACAAAGACATCCTTCGAACCGCCGT 33259 Query 1878 TTACGATGACGGCAGATGCTTTTACATCAAAGATGAGGCGCACA 1921 |||||| | ||| | ||||| || ||| |||||||| |||| Sbjct 33260 CTACGATCATGGCCGTTGCTTCTATATCGTCGATGAGGCTCACA 33303 Score = 91.5 bits (100), Expect = 4e-14 Identities = 265/398 (67%), Gaps = 14/398 (4%) Strand=Plus/Plus Query 39647 ATGCCATGCGCGCACCGCCATGATTGCACCGACAGCCCCTAAAGCGTAACAAGCGAACGC 39706 ||||||| | ||||||||| |||||||| ||||| || | || || || ||||| Sbjct 27441 ATGCCATTCCCGCACCGCCTCAATTGCACCAACAGCACCAAGGGCCACGCACGCAAACGC 27500 Query 39707 GCCTTGAGCATG-GCTGTCGATTAGATACTTTAACTGCTTAGCGC---TGCTTGAGCTTT 39762 ||| | | |||| | || || ||||| | ||| | | | || || || Sbjct 27501 GCCGTAAACATGAGATGATGAA-AGATAGGCAACTTGCCTCCCCTCAATTCTGGAC--TT 27557 Query 39763 GCGTGTGGTCTCGGCGCTTAAGCTCGATTAGTATTGGCGGGTTGCAAGGTATGATAATGT 39822 | ||||| ||||||||||| || || || | ||||||||| ||| || || || |||| Sbjct 27558 G-GTGTGATCTCGGCGCTTCAGTTCAATCACGATTGGCGGGCAGCATGGGATAATGATGT 27616 Query 39823 CACTAGCGCCAGTATTCATACCCTCAACCTTTTGCTGTGCGCCTTGTCGCTTTGTTCGCT 39882 |||| || || |||||||| ||||| || |||| || || ||| ||| || Sbjct 27617 CACTGGCCCCGGTATTCATTCCCTCCTGCTGCTGCTTGTAACCCTGAAACTTGCTTCTCT 27676 Query 39883 TGCCTTCGTTACGAATATGAACTGCAATTTC-TGCCATCTCTGGAAACTCAGCCCGAAGC 39941 | |||||||| || ||||| ||||| | ||| || ||| ||||| ||| Sbjct 27677 TTCCTTCGTTGCGGATATGTGTGGCAATAGCATGCAAT-GATGGGAACTCGTTTTTCAGC 27735 Query 39942 AAAGAAAGAAAGCTAATTTGCTCTGCTGTTTCCATAGGGCAGGCGCCGCGAAAAGTCGTG 40001 | | ||| | || |||||||||| ||||| | ||| | || || ||| | || Sbjct 27736 AGCTTGAAAAAACCGATCAGCTCTGCTGTCTCCATGGCGCAATCTCCACGGAAATTGGTA 27795 Query 40002 TCACCAAATACGGGTAT-TTGTGGGGG---GATTTTAG 40035 || || ||||| || || | || |||| |||||||| Sbjct 27796 TCGCCGAATACCGGGATGTAGTCGGGGATTGATTTTAG 27833 Score = 80.6 bits (88), Expect = 7e-11 Identities = 142/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 4406 GAAGTAAAAGCCGAAGTCCCTGACATTGAAACCGAAGATGGGCGCAAGAGGATTAAATCA 4465 |||||| | || | || || ||| | ||||||| ||| || |||||| ||||||||| Sbjct 35280 GAAGTAGAGGCGCACGTTCCCGACCTGGAAACCGTAGAAGGCCGCAAGCACATTAAATCA 35339 Query 4466 CTGGCGGCTAAAATCTCTAAAAGTAAAACGGCACTTGATACCCCTATGCGCGATTATTTG 4525 ||||| ||||| ||| | || || ||||| | || | |||||||| ||||| || Sbjct 35340 CTGGCAGCTAAGATCAGCAGCAGCAAGACGGCTATCGACAAGCCTATGCGTGATTACCTG 35399 Query 4526 CGTATTCTCAAAACTCAACCTAAAGAGCTTGAGAAAAATGCGCGCGAATCAAAAGAGCGT 4585 || | || | | || |||| | ||||||| || || |||||| ||||| Sbjct 35400 CGCGAGATTAAGGCGCTGCCGAAAGTGGTTGAGAAGAACGCCCGCGAAAGCGTGGAGCGA 35459 Query 4586 TTTGATAGATTGCGCGATGAACTGCTA 4612 || ||| | |||| |||| | |||| Sbjct 35460 TTCGATGCACTGCGTGATGCAACGCTA 35486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139100053924832