Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025466.1 Length=40161 Score E Sequences producing significant alignments: (Bits) Value seq1959 354 2e-93 >seq1959 Length=43063 Score = 354 bits (392), Expect = 2e-93 Identities = 1160/1771 (65%), Gaps = 75/1771 (4%) Strand=Plus/Plus Query 17803 ATGCGCGGCGTGTCTATCAAGCTGTTCAGTGCGATCATTAAATCAAGCCCTGTTGATTCT 17862 ||||| | || ||||| ||||| |||||||||||||| ||| |||||| || ||| || Sbjct 14240 ATGCGTGCTGTTTCTATAAAGCTTTTCAGTGCGATCATAAAAGGAAGCCCGGTAGATACT 14299 Query 17863 GGCAGGTTTCGCGCTAACTGGATGACTTCAGGCTCAAGCCCAGCAACTGAAATTAATGAA 17922 |||||||||||| |||||| | | |||| || ||||| | | || || | Sbjct 14300 GGCAGGTTTCGCATGAACTGGCAGGCAGCAGGAGCATCGCCAGCTTCAGGAACTATCCCA 14359 Query 17923 GGCACAGACGTTAGTGGAGC---GTCATCTACTGCCGCTGCTACTAACTACGTAGATGGC 17979 || ||||| || ||||||| | |||| | | ||||| | ||| ||| | | Sbjct 14360 GGAACAGATGTAAGTGGAGATAAGGCATCATCAGATGCTGCAA---ACTTCGT---TACC 14413 Query 17980 GCTA-TGTCATCAAGC--GTGTTTACTTTATCGAATAATCTACCATATGCGCACAGCCTG 18036 |||| || | || | | ||||| || | ||||| || ||||| || | || Sbjct 14414 GCTACTGCTGACTGGCAGGAGCTTACTCTAACCAATAACCTGCCATACGCTGAAGTTCTT 14473 Query 18037 GAGTTTGGCGGATACAAACCTGGTAACGGTGCAAATACAGTTGGCGGCTTCTCAAAGCAG 18096 ||||| |||||||| || || | || | |||||| |||| || | |||||||| Sbjct 14474 GAGTTCGGCGGATAT---CCAGGGGATGGGCCGAATACAATTGGTGGATATTCAAAGCAA 14530 Query 18097 GCTCCCACTGGAGTTGTCAGAATAAATGCAGATAGATTCCAGCGAATACTAGACGAACAG 18156 || || |||| | || | | ||| | ||||| | | || | ||| || Sbjct 14531 GCGCCAGCTGGCATGGTTCGTGTTAATATAACCCGATTCAATACGCTGCTTAATGAAGAG 14590 Query 18157 GC-GAGGCTTTATAAATGAGCGAAGGTTACACAGAGTCGATTCAAAAGGCGCTTGATATT 18215 || | | || |||||| | | |||| ||| || |||||| | |||||||| Sbjct 14591 GCTGCGAAGGTA-AAATGACCTA---TTACGAAGATCTGA--CAAAAGCCT-TTGATATT 14643 Query 18216 GCTGCAAAGGCATTCGGCACAGCTAATAGCAT--AGTTGTAGCGCTTGAGAATATTGGCG 18273 || | | |||| || || | |||| ||| || ||| | |||||||||| | | Sbjct 14644 GCGCTGATGTCATTTGGAGCAACAAATAACATCAAGGTGTGTC--TTGAGAATATCGATG 14701 Query 18274 CTCCTACGGATACAGCAACGCCTTATTTGGCAGGTTACTTTATACCAGCACCGAA---TG 18330 | ||||| || |||||||| ||| | || | |||||| | | | || || Sbjct 14702 CGCCTACCAGCACGGCAACGCCATATCTAGCCAG---CTTTATGCTACTGGCTAACACTG 14758 Query 18331 AAGATGCTGATTTGTATTTCACTGATAAGCGATCTGGAATCTATCAGATTGATATTAACT 18390 || | || ||| | |||| ||| |||| |||| | || ||| | || || || | Sbjct 14759 AACAGGCCGATCTTGGCTTCAATGAGCAGCGTGCTGGCGTATACCAGGTAGACATCAATT 14818 Query 18391 ATGCATCACATTTAGGCACCGCATCAATCAACAGAATGGAAGATAAACTTAACGCATA-- 18448 | |||||| ||| | || || | |||| ||||| ||| ||||| || Sbjct 14819 ACGCATCAGCAAAAGGTAGTGCGCCAGTTAACAAAATGGCTGATCTTCTTAATT-ATGCT 14877 Query 18449 TTTCGCCCCGGG-CAACAC--ATTAAACCGTGGCGATGTATGCGTGCAA-----ATTACT 18500 ||||| | || |||||| | || | | || | |||| || || | | Sbjct 14878 TTTCGTGCAGGAACAACACGCACTAGAAA----CAATATCTGCGCCGAAGTACAATCAGT 14933 Query 18501 AACTTTAGCGCGGCTCGTGTTACAGTTGAAAACGGATGGGCTATTAAACC--TGTCAC-- 18556 || | | || |||| | |||| |||||||||||| | || |||| Sbjct 14934 AAGCCTGGGGCCGCTCATTGTACA-----AAACGGATGGGCGACCCGCCCACTGTCTATT 14988 Query 18557 AATTACATGGCAAACACATACTGAGAGGTTATAACTATGGCTG---TACAACCGTTTCGC 18613 |||| || ||| |||||||||||||||| ||||||| ||||||||| Sbjct 14989 AATTTTATTGCATT----TACTGAGAGGTTATAAA-ATGGCTGGCTTACAACCGTACAAG 15043 Query 18614 GGGGCTACTACCGCACAATTTTACGTACCAGAAGTGATACAGGGTGTAACGCCTACGTCG 18673 || || || ||||| || |||||||| ||| || | | || || |||||||| || Sbjct 15044 GGCGCGACAACCGCTCAGTTTTACGTTGAAGAGGTTAACCCAGGGGTTACGCCTACTTCT 15103 Query 18674 CCAAGCTGGCGACCACTTCGCTCGAATAGCGGCATTCCATCAGTCACTCGTGATGCTTTG 18733 || ||| ||| | ||| | | |||| ||||| | || ||||| ||||| || Sbjct 15104 CCGGCATGGAAACCGTTGCGCAATACTGGCGGAATTCCTGCGGTGACTCGCGATGCACTG 15163 Query 18734 GTATCTGCTGAACTAGATGGCGGTCGTGAGGTGTCAAGCATTCGAACAGGTAACGAGCAA 18793 || || ||| || ||||||||||||||| |||| || || ||||||||| || Sbjct 15164 GTTTCCAATGAGCTTGATGGCGGTCGTGAGACGTCATCAATCCGCACAGGTAACCGTCAG 15223 Query 18794 GTTGCTGGTGAATACTCAATTGAGCTTAGTCAGTCATCGCAGGATGATTTGCTAGCCGCC 18853 ||||| ||||||||| | |||||||||||| |||||||||||| |||| |||| Sbjct 15224 GTTGCAGGTGAATACGCGATTGAGCTTAGTTCTGAGTCGCAGGATGATCTGCTTGCCGGA 15283 Query 18854 GCAATGACAAGTGATTGGGTTGCTGGTGAAACAGCTTC-GGCATTATCGGTTACCGTTGA 18912 || |||||||| || ||||| | ||| || || ||| ||| | | | || || Sbjct 15284 GCCATGACAAGCGAGTGGGTAGATGGGGAGACCATTTCTGGCCTGA-CCATTGATGTATC 15342 Query 18913 TGCTACAGCTAAAACATTCACTCGCGCCGCGGGTAGCTTCATCACTGACGGCGTTGAAAT 18972 ||| |||| || ||||||||||||| | | ||||||||||| ||||||||||||||| | Sbjct 15343 TGCATCAGCGAAGACATTCACTCGCGACACTGGTAGCTTCATTACTGACGGCGTTGAAGT 15402 Query 18973 TGGCGCACTGATTTACTTTGAAGGTTTGACAGGCAATAACTCTAAACCGTTTTTCGTCAC 19032 ||||| |||||||| || || |||| ||| | || | || || || || | ||| Sbjct 15403 TGGCGATCTGATTTATTTCCCTGGCCTGACTGGCGACAATGCAAAGCCTTTCTTTGCCAC 15462 Query 19033 TAACGTTACCGCTTTAGTCGTTACTGGCTCAGGTATTCAGTTAGCGCTAGAAG-ATGAGA 19091 | ||| || || | || | ||||| | || ||| | |||| || | |||| | Sbjct 15463 CACCGTAACTGCGCTGGTTATCACTGGTGCTGGCATTGCGCATACGCT-GACGAATGAAA 15521 Query 19092 CTGGTGTTACTACTGACTTTATGAC--CGGC-GATAAGTTAGAAACTGGTAATTTATGTA 19148 ||| ||| | || | | |||| |||| |||||||||| || || || | |||| Sbjct 15522 CTGATGTGGCGACAG---CTCTGACCACGGCAGATAAGTTAGGTACCGGGAACCTGTGTA 15578 Query 19149 AATCAGTGTCGATCTTAACTTGGTTTAAAGGTAAGTGCGGTAACCCTGACGCATACGTTA 19208 | | | || ||| | || ||| | || || || ||| | ||||| | | | Sbjct 15579 AGACCTTCTCTATCCTGACATGGATGAAGGGCCGTTGTGGTGGCGCTGACAGCTTCATCG 15638 Query 19209 TTACCCGCGGTGTTGAGTTTACGGGATTTACTATTGAGCAAGCGGTTAACGCTATGGTTA 19268 |||| ||||| |||||||| | ||||| |||||||||| || |||||||| ||||||| Sbjct 15639 TTACTCGCGGCGTTGAGTTCTCTGGATTCTCTATTGAGCAGGCTGTTAACGCCATGGTTA 15698 Query 19269 CCGGTTCATTACCGTTTATCGGTTTGAGTCAGGAAGTCCTAGCGGCATTACCAGCAGGTT 19328 | || || || ||||| ||||| | || |||||| |||| | || |||||||| || | Sbjct 15699 CTGGGTCGTTCCCGTTCATCGGGCTTAGCCAGGAAATCCTTACCGCGTTACCAGCTGGAT 15758 Query 19329 CAACATTTACAGTGAGCTACACAGCAGATCCATTCGCATCAGTAGATGTTTCACTATTCG 19388 | || |||| | || | | || | || || || || |||||| | ||||| Sbjct 15759 CTACCTTTAACTTCAGTTTCGATGCTCAGCCGTTTGCCAGCGTTGATGTTACTGCATTCG 15818 Query 19389 ATGGTGTTACACCTTTAAAGCTGGTTGACTCGTTTACCATCACTAACGACAACGAAGCTA 19448 ||||| | || |||| | || | || |||||||| |||||||||| | Sbjct 15819 ATGGTACCGCCAAGTTGGAGCTTATCGATACTTTCACCATCACGAACGACAACGGGACAT 15878 Query 19449 GCGCGCAGTTTGAGCTGGGTAATCGCTCAGTTGCATTTGTTGAGCGTGGCCGAGCTATGA 19508 || ||||||| || || || || ||||| || |||||||| || || || | Sbjct 15879 CAGCACAGTTTGCACTTGGCGATGCATCGGTTGCCTTCGTTGAGCGCGGTCGCGCAGCAA 15938 Query 19509 ATACATTCAGCATGGCCGCTAAGTTATACGA 19539 | || |||||| | || | ||||| || || Sbjct 15939 ACACCTTCAGCCTTGCAGGAAAGTTGTATGA 15969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128384050966738