Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq122 188 6e-43 seq1959 89.7 4e-13 >seq122 Length=4874392 Score = 188 bits (208), Expect = 6e-43 Identities = 148/177 (84%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 ||||| ||||||||||| ||||| ||| | || ||||| |||||||| || || ||||| Sbjct 3215813 GGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAGCAC 3215754 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 ||||| |||||||||||||||||||| || || ||||||||||| || || ||||||||| Sbjct 3215753 CCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAACTCT 3215694 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 109285 |||| || ||||||||||| ||||| || | |||||||||||||| || || ||| Sbjct 3215693 TTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 3215637 Score = 114 bits (126), Expect = 1e-20 Identities = 74/80 (93%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 9581 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTA 9640 || |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 217169 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 217228 Query 9641 ACC-ACTGAGCTAAGGGGCC 9659 ||| ||||||||| |||||| Sbjct 217229 ACCAACTGAGCTATGGGGCC 217248 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 109109 GGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGCAT 109168 ||||| || || ||||| ||||| || || |||| ||| || || | | | Sbjct 1181484 GGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAAGAC 1181425 Query 109169 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 109228 |||||||||||||||||| | ||||| || || || || ||||| || || || ||||| Sbjct 1181424 CCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGTTTCAACTCG 1181365 Query 109229 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAG 109278 |||||| |||||||||| || || ||| | |||||||| ||| |||| Sbjct 1181364 CTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 1181315 >seq1959 Length=43063 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 9582 TTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAA 9641 ||||||| ||| | ||||| ||||||||| |||| ||||||||||||| | ||||||| Sbjct 8189 TTTGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAA 8130 Query 9642 CCACTGAGCTAAGGGGCCGTAT 9663 || ||||||||| |||||| || Sbjct 8129 CCGCTGAGCTAAAGGGCCGAAT 8108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386847269572957