Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq122 114 2e-19 seq508 98.7 1e-14 seq93 93.3 6e-13 seq634 89.7 7e-12 >seq122 Length=4874392 Score = 114 bits (126), Expect = 2e-19 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 165744 TATTTGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTG 165803 ||| | || |||||| ||| ||||| || |||| |||||||||||||| |||||| | Sbjct 2176391 TATATTGCCGACCTGATCAGCTGGGGGGCTATCGGCGCGCGCACCACCGAAAGCCAGATC 2176450 Query 165804 CACCGCGAGATGGCGTCGGCGCTGCCGCTGCCC-ATTGGCTTCAAAAACAGCACCGACGG 165862 |||||||| ||||| |||||||| | |||||| |||||||||| ||| |||||||||| Sbjct 2176451 CACCGCGAAATGGCCTCGGCGCT-CTCCTGCCCGGTTGGCTTCAAGAACGGCACCGACGG 2176509 Query 165863 CA 165864 || Sbjct 2176510 CA 2176511 Score = 93.3 bits (102), Expect = 6e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 165777 GGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCC 165836 || || || ||||| || |||| ||||||||| ||||| || | ||| | |||| Sbjct 3338142 GGCGCCCGTACCACTGAATCCCAGACGCACCGCGAAATGGCTTCTGGCCTGTCAATGCCG 3338083 Query 165837 ATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCCGTGCGCACT 165896 |||||||||||||| |||||||||||||| ||| || || | | ||| ||||| || Sbjct 3338082 GTTGGCTTCAAAAACGGCACCGACGGCAGCCTGGGTACCGCGATTAACGCCATGCGCGCT 3338023 Query 165897 GCCGCCCAGCCACACACCTTTCTC 165920 || ||| ||||||| |||| || Sbjct 3338022 GCGGCCATGCCACACCGCTTTGTC 3337999 >seq508 Length=70226 Score = 98.7 bits (108), Expect = 1e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||| ||| || ||||||||||| ||||||| | | || ||||| ||| || Sbjct 50599 ATCTACACGGTCCTGAAGCAGGTGCA-CCCCGAA----AGTGGTAT-CTCCAGCAAAGCC 50546 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||| |||||| || || ||||||||| | | | |||| | |||||||| | Sbjct 50545 ATGTCCATCACGAACTCATTCGTGAACGACATGTTGAAGAGGATCGCCGCCGAGGCCAGC 50486 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | ||||||||| | ||| ||| | | | |||||||| ||||| || Sbjct 50485 CGTCTCGCCCATTCCAACAAGAGGGTCACCATCACCTCTCCGGAGATCCAAACCGCTGTC 50426 Query 725091 CGCCTGATCATGCGCGGCGAACTGGC 725116 || || | ||| ||| || |||| Sbjct 50425 CGTCTCCTTCTGCCCGGTGATTTGGC 50400 >seq93 Length=974399 Score = 93.3 bits (102), Expect = 6e-13 Identities = 149/205 (73%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 ||||| || || | || | |||| ||| |||||||| ||||| ||||||||||| Sbjct 914840 GCCATTGAAACACTCCCATGTGTGAAGAAGAAGGCCGATTGGGCCATGAAGTGGATTGCT 914781 Query 1456156 AAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 | || | || | ||| ||||| ||||| | | | |||||| || || ||||| ||| Sbjct 914780 CATGA--GTCT-GCCACGTTTGCTGAGCGAGTAATTGCCTTTGCTGCTGTGGAGGGTATC 914724 Query 1456214 TTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || ||||| || || || ||| ||||| || ||||| |||||| | || || ||||| || Sbjct 914723 TTCTTCTCTGGAAGCTT-TGCTGCCATTTTCTGGCTTAAGAAGAGAGGGCTTATGCCAGG 914665 Query 1456273 TCTTCTGCTTTAGCAACGAATTTAT 1456297 |||| ||| ||||| || || || Sbjct 914664 TCTT-ACCTTCAGCAATGAGTTGAT 914641 >seq634 Length=45141 Score = 89.7 bits (98), Expect = 7e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 |||||||||||| || || ||||| | ||||||||||||||||| |||||| || Sbjct 31382 GACGAGATGGTGGTCGTCAAGGACATTGAGATGTTCTCCATGTGCGAGCATCACCTGGTG 31441 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGC 2133677 ||||| |||||||| | | |||||||||||| | |||||| | ||||| ||| Sbjct 31442 CCCTTCTACGGCAAGGTGTCCATCGGCTACCTGCCCCAGAAGAAGATCCTGGGTCTCAGC 31501 Query 2133678 AAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACG 2133737 ||| | | | ||||| || || | | || |||| || |||||| ||||| Sbjct 31502 AAGCTGGCCAGGATCGTGGAGATCTACAGCAGGCGACTCCAGGTGCAGGAGCGTCTCACC 31561 Query 2133738 CGCCAGATCGCC 2133749 ||||||||| Sbjct 31562 AAGCAGATCGCC 31573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177207122138606