Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_026593.1 Length=59419 Score E Sequences producing significant alignments: (Bits) Value seq122 86.0 2e-12 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 2e-12 Identities = 229/341 (67%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 57392 CAGCCTTACATCGACTCGCCCGAGCCACACCTGATGTACCAGTTCGTCGACCTGGCCGGC 57451 |||||||||||||| || |||||||| ||||| ||||||||| | |||||||| ||| Sbjct 2947180 CAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGC 2947121 Query 57452 GGGCGGAAACTCAACGACGTCACGAAGGTCTACGACGACGGCCACCACTTCGCGTTAACC 57511 || || || || ||| || | | ||| | |||| | ||| |||| | ||| Sbjct 2947120 CCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACC 2947061 Query 57512 GGTGCCCGCGGCTGCATGATCTACGTACACCG--CAGCGTCATCGAAACAGTCGGTGGCC 57569 || || ||| ||| | ||| ||||| ||||| || || | || || ||| Sbjct 2947060 GGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG--ATTGAGAAGGTTGGCGGCT 2947003 Query 57570 TCGACCCAGAGTTCGGCGGCTGGGGATG--GGAACAC-CCCTCCTGGTCCGACCGCATCT 57626 ||||||| | | || ||| || ||| |||||| | ||||| | | ||||| Sbjct 2947002 TCGACCCGGTTTACG--GGCGCGGCATGTACGAACACTCTGACCTGGCGCTA-CGCATTC 2946946 Query 57627 ACAACGCCGGCCTTACCACATTCCGGTACGGCGACGTGTGC-GGCTCCCACAAGCTCATT 57685 | |||||||| | |||| | || || ||||| ||| |||||| | ||||| ||| Sbjct 2946945 ATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGT-TGCTGGCTCCGAAAAGCTGATT 2946887 Query 57686 CACTCTATGGATGAGCACCTAGAGGTGAAACGTTCCGTCCC 57726 |||| |||| || || || |||| | ||||| || || Sbjct 2946886 TACTCGCTGGACGAACATGAAGCGGTGGACCGTTCAGTACC 2946846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190005067678286