Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_026607.2 Length=159914 Score E Sequences producing significant alignments: (Bits) Value seq83 143 3e-29 seq122 132 5e-26 seq1959 93.3 4e-14 >seq83 Length=912621 Score = 143 bits (158), Expect = 3e-29 Identities = 339/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 133201 CACATC---TGGACTGAACAGTGTGATGTACCCAT-TTTTACCGAGACGTTCCATCATCA 133256 |||||| ||||||||| || | ||| | || ||||||| ||||||| ||| | Sbjct 580243 CACATCCGATGGACTGAATAGCGAGATATCGCCGCCTTTTACC-AGACGTTGATACATGA 580185 Query 133257 AATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCCTTTGT 133316 | |||||||| | || || ||||| ||||| | |||||| | || || || || Sbjct 580184 GTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGT 580125 Query 133317 TGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAG 133376 | || || | || || | | |||||| || | |||||||| || ||| | || || | Sbjct 580124 TATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCG 580065 Query 133377 CTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCC 133436 | ||||| || ||||| |||||||| || |||||||| || || ||||| || ||||| Sbjct 580064 CGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGT 580005 Query 133437 AGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTC 133496 |||| || || || ||||| |||| ||| || ||| |||| || | Sbjct 580004 AGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCAC 579945 Query 133497 GAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATAATACT 133554 |||| || || ||||| ||||| || || || ||| ||| | || |||| ||| Sbjct 579944 GAATACGGCCAGCATTGATACCGATCCCTGCGCG-TTG-TGAAACGTATTTAACGATAGC 579887 Query 133555 GTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACT 133614 || | || || ||||| | | ||||||| || |||| || || || || Sbjct 579886 ACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCT 579827 Query 133615 AAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCG 133674 || || ||||| || || || |||| ||||| || || ||||| || ||||| | Sbjct 579826 GAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAA 579767 Query 133675 AGTAGATACAGCGTCATAAAAGCGA 133699 || || || || |||||||||||| Sbjct 579766 GGTCGACACGGCATCATAAAAGCGA 579742 >seq122 Length=4874392 Score = 132 bits (146), Expect = 5e-26 Identities = 271/403 (67%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 133268 TGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCCTTTGTTGTTCTTTAAT 133327 |||| || ||||| | |||||| | ||||| | || ||||| ||||||||| | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 133328 ACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 133387 |||| |||| |||| || || |||||||||||||| || | || || |||||||| || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 133388 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 133447 || || ||||| ||||| || || || || || ||||| || || || |||| ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 133448 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 133507 ||| || || | |||| || | || ||| || || || |||| Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 133508 GCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCCGCA 133567 ||||| ||||||||||| || |||| | ||||| | ||| | | | || Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 2805972 Query 133568 TTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTA 133627 ||||| |||| || ||||| ||||| | ||| || || || ||||| || || Sbjct 2805971 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 2805912 Query 133628 GGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCT 133670 || || || | || | |||||| || || |||| ||||||| Sbjct 2805911 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 2805869 Score = 118 bits (130), Expect = 1e-21 Identities = 75/80 (94%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 62446 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 62505 || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 217169 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 217228 Query 62506 ACC-ACTGAGCTAAGGGGCC 62524 ||| ||||||||| |||||| Sbjct 217229 ACCAACTGAGCTATGGGGCC 217248 >seq1959 Length=43063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 62447 TTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAA 62506 ||||||| ||| | ||||| ||||||||| |||| ||||||||||||||| ||||||| Sbjct 8189 TTTGGTGACCCTTACTGGATTTGAACCAGTGACCTGGCGATTATGAGTCGCAAGCTCTAA 8130 Query 62507 CCACTGAGCTAAGGGGCCG 62525 || ||||||||| |||||| Sbjct 8129 CCGCTGAGCTAAAGGGCCG 8111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511556748365520