Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_026611.1 Length=43129 Score E Sequences producing significant alignments: (Bits) Value seq302 102 2e-17 >seq302 Length=239003 Score = 102 bits (112), Expect = 2e-17 Identities = 249/368 (68%), Gaps = 7/368 (2%) Strand=Plus/Plus Query 38595 TACAACCCCTCAGTTACTTCATCAAGAAAGCCCA-GCAGTCCTTCAACGAGTACATCCGA 38653 || ||||||||||||| ||| || |||||||| |||| | ||||| |||||||| Sbjct 152714 TAAAACCCCTCAGTTATTTCCACAGCAAAGCCCAAGCAG-CATTCAATACATACATCCGC 152772 Query 38654 GAGCGAGATAAAGACCAACCGTGCATCAGCTGCGGCCGCTACCACTCCGGGCAA-TGGCA 38712 | || ||| || || || || ||||| || || | || | ||| || | | Sbjct 152773 ACAAGGGACGCAGAGCAGCCCTGTATTAGCTGTGGTCGTCATCA-TGAGGGTAAGTATGA 152831 Query 38713 CGGCGGGCATTATCGAACCACCGGCGCTAACCCTGAGCTTAGGTTCGATGAGTTTAACTG 38772 || |||||||||||||| || || || | | | | | || || |||||| Sbjct 152832 CGCAGGGCATTATCGAACGCGTGGAGCCTCGCCAGCGACTCGCTATGACGAAACTAACTG 152891 Query 38773 TCACAAGCAGTGCGCCCCCTGCAATAACCACCTATCCGGGAATATAGAAAACTACACGCC 38832 || ||||| |||| ||||| ||| | ||| |||| || ||||| |||||||||||||| Sbjct 152892 CCATAAGCAATGCGTTCCCTGTAATCAGCACTTATCAGGAAATATCGAAAACTACACGCC 152951 Query 38833 AAACCTGATCGCCAAAATCGGCCGGGCGCGATTCGATTCGCTCATGTCACACCATGAGCC 38892 ||||| |||| ||||| || | | | ||||||| | | ||| | || | Sbjct 152952 GAACCTTATCG-AAAAATAGGGCAGCAGGCATTCGATATGTTGATGGGGCCGCACCCGGT 153010 Query 38893 CAGGAAGTGGACGCGGGACGAGTTGGAAGAAATCGCCGCAACGTATCGG-AGAAAGACCA 38951 | || ||||||||||| ||| ||||| || | || || || || ||||| |||| Sbjct 153011 AAAAAAATGGACGCGGGAAGAGCTGGAACAACTGGCGGCGCATTACAGGCAGAAA-ACCA 153069 Query 38952 AAGAGCTA 38959 ||||||| Sbjct 153070 GAGAGCTA 153077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137880944600546