Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq43 127 2e-24 seq3962 102 8e-17 seq275 91.5 1e-13 >seq43 Length=2082672 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 ||||| || || |||| ||||| ||||| || || |||||||| | ||| |||| || Sbjct 901288 CGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAA-GGTGCGACC 901230 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || ||||| ||||| ||||| ||||||||||||||||| || || ||||||||||| Sbjct 901229 ATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTT 901170 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| ||||| || || || | | || || | ||| || || |||||||| Sbjct 901169 GTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAAT 901110 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| || || || | || || || || || |||||| Sbjct 901109 GGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || || || || ||||||||||| ||||| |||||||| | ||| || | || || Sbjct 901054 ACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGACAA-AGTACGGCCATCTTC 900996 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||||| || || ||||| ||||| | |||||| || || || ||||| ||||| || || Sbjct 900995 AAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTG 900936 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| || | | || || | || || || ||||| ||||| || Sbjct 900935 GATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTT 900876 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 900875 GCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq3962 Length=6517 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || || || || |||||||| || || ||||||||||| | ||| |||| | ||| || Sbjct 395 ACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAA-GGTGCGGCCGTCCTC 337 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||| || ||||| || || |||| ||||||||||| || || ||||| ||||| || || Sbjct 336 GAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTG 277 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| || | | || || | || || || ||||| ||||| || Sbjct 276 GATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTT 217 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || |||||||| ||||| Sbjct 216 GCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 >seq275 Length=398669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAG--AGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||||||||||||||| | || ||||| | || || ||||| || || ||||||| Sbjct 170723 TTTTGAATGTTGTAGT--CTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | ||||||||| || || || || ||||| || || |||||||| |||||| | Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | | ||| || | ||| || || | || || ||||| || || | ||||| || | Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 134704 AAATTTGCATT 134714 | || |||||| Sbjct 170545 AGATCTGCATT 170535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505358833622760