Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq45 131 2e-25
seq93 123 3e-23
>seq45
Length=1811775
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804
|| ||||| || || |||| |||| | || ||||| || || || | ||||| ||||||
Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554
Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864
|||||||| ||| ||||||| || |||| |||||||||||| | || |||||| |
Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATACAGTGA 850614
Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924
|| | ||| || ||||| || ||||| || | |||||| ||||| ||||||
Sbjct 850615 ATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTCG 850674
Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974
|| || || || || ||||||||| |||| || || || || |||||
Sbjct 850675 TAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724
Score = 105 bits (116), Expect = 9e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 68451 GAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTG 68510
||||||||| ||| || || |||| |||| || |||||||| ||||| | |||||
Sbjct 848717 GAAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTG 848776
Query 68511 ACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAAT 68570
| |||||| ||||| || |||||||| || ||||||||||||| | | || || | |||
Sbjct 848777 AGATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAAT 848836
Query 68571 TTCCCaaa 68578
||||||||
Sbjct 848837 TTCCCAAA 848844
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|| || || || ||||| || || | ||||||||||| || || | || | |||
Sbjct 849144 TGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATAGAC 849203
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| |||| ||| || || ||||| ||||||||||||||||| | |||||||
Sbjct 849204 TCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAAGAG 849263
Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898
|| || | ||||||| || || || || | | ||||||||| || | |||
Sbjct 849264 TTCCTCACACCATGTTTTGCAATCTTGCTACGTAAAGCATCCCAATCCCAGAGTTTAGAC 849323
Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930
||| |||||||| | || |||||||||
Sbjct 849324 GGTGTCACATTCCACATGTCAGGTTGTAGAAT 849355
>seq93
Length=974399
Score = 123 bits (136), Expect = 3e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946
||||| || ||||||| ||| ||||||||||| || | ||||| || || ||||||||
Sbjct 914959 TATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGAAAG 915018
Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006
|| || || || | |||||| || | || || ||| || ||||||||| | || |||
Sbjct 915019 CCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACTGAATCTTTCCACTAAGTTT 915078
Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066
||||| || || |||||| ||| ||||| || || | ||||| ||||||| |||
Sbjct 915079 TCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATGTTTC 915138
Query 40067 TCATCGGGTGTCA 40079
||||| |||||
Sbjct 915139 TCATCCTTTGTCA 915151
Score = 113 bits (124), Expect = 6e-20
Identities = 161/226 (71%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||| ||| || || || || || || || ||||| || || | ||| |
Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || ||||||||||| |||||| |||||||| || || || || ||||| |
Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746
Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA---TCATTATGTATCCACTTCTGTGCCCAATCAG 39815
||| | || ||| | | | | | |||| | ||||||||| |||||||| |
Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806
Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
| |||||||| ||||| || | |||||| || |||||||| | |||
Sbjct 914807 CCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAAATA 914852
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 39272 TAAAAGTCAACATCTAAAGAAAAATGATTATCTTC-TTGTGA--CATAACTCCCATTTTT 39328
||||||||| ||||||||| ||| ||| || | || | | ||| |||||| ||
Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATTAGCCATCACTCCCCACTTC 914150
Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388
|| ||||||||||| || || || |||||||| |||||||| ||||| || | |||
Sbjct 914151 TGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTCC 914210
Query 39389 ATGAAATCAAACGGATT 39405
||||| ||||| || ||
Sbjct 914211 ATGAAGTCAAATGGGTT 914227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686855023627320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |