Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq122 152 6e-32 seq83 127 2e-24 >seq122 Length=4874392 Score = 152 bits (168), Expect = 6e-32 Identities = 346/519 (67%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 143073 GGACTGAACAGAGTTATGTATTCATCTTTGCCAAGACGTTCCATCATCAGGTCGTTGATT 143132 || ||||||||||| || | |||| | || || || | |||||| | ||| | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 143133 TGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGT 143192 || | || ||||||| ||||| | ||||| | || ||||| ||||||||| || Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 143193 ACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCA 143252 || || || | || ||||| |||||||| ||||| ||| ||| || || ||||| || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 143253 CGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATA 143312 || || ||||| || || ||||| || || || || |||||||| || |||| ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 143313 ACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCC 143372 || || || |||||||| | ||| || ||||| | || Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 143373 GCGTTAATGCCAATACCTGCACGCTTACTGATATACT---CAATAATGCTTGCACTGGCT 143429 ||||||||||| ||||| ||||||| | | |||| |||| ||| | |||| Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGC- 2805973 Query 143430 TTGTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGA 143489 |||||| || | ||| ||| || ||||| | || || ||||| ||||| || Sbjct 2805972 --GTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 2805915 Query 143490 GTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTAGATACG 143549 ||||| || || | |||| ||||||||| || |||| ||||| | | || || | Sbjct 2805914 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATC 2805855 Query 143550 GCGTCATAAAAACGAATTACGTGCGCCAGGCGGTTTTCA 143588 || || || ||||| | |||| | || ||| ||||| Sbjct 2805854 GCATCGTAGAAACGCTTGACGTAATCAAGACGGGTTTCA 2805816 >seq83 Length=912621 Score = 127 bits (140), Expect = 2e-24 Identities = 330/498 (66%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 143072 TGGACTGAACAGAGTTATGTATTCATCTTTGCCAAGACGTTCCATCATCAGGTCGTTGAT 143131 ||||||||| || | || | | |||| | ||||||| ||| || | |||||| Sbjct 580234 TGGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGAT 580175 Query 143132 TTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAG 143191 ||| | || || || |||||||| | ||||| | || || || ||| || || || Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 143192 TACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACC 143251 || | | | || | ||| | ||||| || || || ||| ||| |||||||| || Sbjct 580114 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 580055 Query 143252 ACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAAT 143311 || || |||||||| || || ||||| || || || ||||||||||| |||| || || Sbjct 580054 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 579995 Query 143312 AACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCC 143371 | || ||||| ||||||| | |||| ||| ||||| | || Sbjct 579994 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 579935 Query 143372 CGCGTTAATGCCAATACCTGCACGCT----TACTGATATACTCAATAATGCTTGCACTGG 143427 || || || || || ||||| || | || || || | ||| || | | ||| Sbjct 579934 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTA-ACGATAGCACTAGAAGTGG 579876 Query 143428 CTTTGTTAATTGACT-TAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGA 143486 | ||| || || | |||| | || ||| || |||| || || ||||| || || Sbjct 579875 C---GTTGATAGAGTCTAAGCTA-TCGCCACACTCGATAAGCACGCATGAGCTGAATTGG 579820 Query 143487 CGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTAGAT 143546 |||||||| || || |||| ||||| ||||| ||||| || ||||||| | || || Sbjct 579819 CGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGAC 579760 Query 143547 ACGGCGTCATAAAAACGA 143564 ||||| |||||||| ||| Sbjct 579759 ACGGCATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544920536193480