Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq1959 98.7 2e-16 >seq1959 Length=43063 Score = 98.7 bits (108), Expect = 2e-16 Identities = 170/244 (70%), Gaps = 11/244 (5%) Strand=Plus/Plus Query 36850 ATCGCTGACATGCAGAAGCGTCAACATGATGTAGCTGAACTCGACGCCAGATACACAAAG 36909 ||| | |||||||||| || || | ||||| |||| ||||||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 36910 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTTCGTGCTGATGTTTCTGCTGGTCGT 36969 ||| | ||||||||||| || | || ||| ||| || || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 36970 AAGTGGCTGCACGTCAAAGCAGTCTGTCCGGACAAGCATAAAACCACCGCCGCCTCCGGC 37029 ||| || ||| | || |||||| | || | | || || || || || ||||| Sbjct 9751 AAGCGGTTGCGCATC---GCAGTC------GCCAGGAAAAACGCCGCCACCACCCCCGGC 9801 Query 37030 GTGGATGATGCTTCCAGCCCCAG-ACTTACTGACACCGCTCAACGGGATTATTTCGTTCT 37088 |||| |||||| | || ||| |||| | ||| | | | || ||||||| || ||| Sbjct 9802 GTGGGTGATGC-AGGAACCGCAGAACTTGCAGACTCAGTTAGACAAGATTATTACGATCT 9860 Query 37089 CAGA 37092 |||| Sbjct 9861 CAGA 9864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122714072692106